View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18917_low_13 (Length: 373)

Name: NF18917_low_13
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18917_low_13
NF18917_low_13
[»] chr7 (41 HSPs)
chr7 (16-136)||(42863595-42863715)
chr7 (167-273)||(6442224-6442330)
chr7 (164-259)||(7459399-7459494)
chr7 (159-292)||(27888333-27888466)
chr7 (167-286)||(22189998-22190117)
chr7 (167-256)||(33008163-33008252)
chr7 (167-286)||(27949332-27949451)
chr7 (159-286)||(39254134-39254261)
chr7 (159-286)||(46517342-46517469)
chr7 (159-285)||(10933968-10934094)
chr7 (167-273)||(32205135-32205241)
chr7 (167-286)||(7775059-7775177)
chr7 (159-245)||(23564078-23564164)
chr7 (167-286)||(11824130-11824247)
chr7 (198-286)||(44350804-44350892)
chr7 (166-241)||(9648982-9649057)
chr7 (201-272)||(19422850-19422921)
chr7 (167-281)||(25686842-25686956)
chr7 (167-241)||(31502511-31502585)
chr7 (170-286)||(6580004-6580120)
chr7 (167-273)||(17813796-17813895)
chr7 (167-281)||(25428485-25428600)
chr7 (18-104)||(32471252-32471338)
chr7 (183-241)||(36845569-36845627)
chr7 (177-286)||(48374441-48374550)
chr7 (167-286)||(45909515-45909635)
chr7 (168-255)||(12263469-12263556)
chr7 (167-274)||(14795190-14795297)
chr7 (167-274)||(15242182-15242289)
chr7 (168-243)||(25092706-25092781)
chr7 (176-255)||(31731288-31731367)
chr7 (177-266)||(1316342-1316431)
chr7 (167-243)||(17354571-17354648)
chr7 (187-272)||(31628078-31628163)
chr7 (182-245)||(21963172-21963236)
chr7 (173-252)||(1688048-1688127)
chr7 (167-281)||(11692238-11692352)
chr7 (167-292)||(13919839-13919965)
chr7 (220-286)||(32212872-32212938)
chr7 (167-243)||(19494383-19494460)
chr7 (167-219)||(12271045-12271096)
[»] scaffold0018 (1 HSPs)
scaffold0018 (168-274)||(27872-27978)
[»] chr2 (39 HSPs)
chr2 (159-292)||(44274285-44274418)
chr2 (167-286)||(12989250-12989369)
chr2 (167-281)||(6980127-6980241)
chr2 (159-255)||(10981569-10981665)
chr2 (167-281)||(37652252-37652366)
chr2 (173-280)||(11539490-11539598)
chr2 (167-255)||(43414414-43414502)
chr2 (189-280)||(472171-472262)
chr2 (164-286)||(25238279-25238402)
chr2 (167-286)||(26767763-26767882)
chr2 (167-255)||(9470140-9470228)
chr2 (17-85)||(13266817-13266885)
chr2 (164-251)||(24895303-24895391)
chr2 (167-275)||(38464222-38464330)
chr2 (209-275)||(14489552-14489618)
chr2 (210-284)||(45554661-45554735)
chr2 (167-255)||(32856168-32856256)
chr2 (176-241)||(7919317-7919382)
chr2 (189-286)||(34142141-34142238)
chr2 (167-286)||(28898038-28898158)
chr2 (167-245)||(15508973-15509052)
chr2 (167-292)||(6315717-6315843)
chr2 (177-275)||(15884498-15884596)
chr2 (159-241)||(18511256-18511338)
chr2 (167-241)||(30849296-30849370)
chr2 (167-271)||(16719447-16719551)
chr2 (167-255)||(27494484-27494572)
chr2 (159-243)||(45270601-45270685)
chr2 (167-245)||(1110257-1110336)
chr2 (202-281)||(4552847-4552926)
chr2 (167-286)||(19639152-19639271)
chr2 (167-286)||(19837745-19837864)
chr2 (167-218)||(25898407-25898458)
chr2 (167-245)||(42182948-42183027)
chr2 (181-243)||(30718372-30718434)
chr2 (159-257)||(32701521-32701619)
chr2 (221-255)||(36471871-36471905)
chr2 (221-274)||(25730453-25730506)
chr2 (164-253)||(35316436-35316525)
[»] chr1 (46 HSPs)
chr1 (167-286)||(26980264-26980383)
chr1 (167-270)||(33193109-33193212)
chr1 (167-284)||(1093073-1093194)
chr1 (167-275)||(19101614-19101722)
chr1 (175-286)||(8899081-8899192)
chr1 (167-275)||(22540427-22540531)
chr1 (164-292)||(30678907-30679035)
chr1 (159-275)||(41948159-41948275)
chr1 (167-255)||(41958142-41958230)
chr1 (159-255)||(44271969-44272065)
chr1 (167-281)||(6133632-6133745)
chr1 (167-281)||(8741230-8741344)
chr1 (167-241)||(15523269-15523343)
chr1 (167-241)||(15531263-15531337)
chr1 (173-286)||(15928620-15928731)
chr1 (159-275)||(15906462-15906577)
chr1 (167-271)||(51732336-51732440)
chr1 (163-238)||(6325863-6325937)
chr1 (167-281)||(32211791-32211905)
chr1 (159-241)||(37525580-37525662)
chr1 (215-292)||(16948525-16948602)
chr1 (171-255)||(931437-931521)
chr1 (159-255)||(29673526-29673622)
chr1 (167-243)||(33114030-33114106)
chr1 (222-286)||(39974202-39974266)
chr1 (167-245)||(3872677-3872755)
chr1 (202-275)||(37552964-37553035)
chr1 (159-275)||(50773123-50773240)
chr1 (194-286)||(12767330-12767422)
chr1 (167-286)||(10659771-10659889)
chr1 (167-286)||(11987685-11987804)
chr1 (167-241)||(2225283-2225357)
chr1 (167-233)||(24911522-24911588)
chr1 (167-251)||(11135798-11135883)
chr1 (167-255)||(28109927-28110015)
chr1 (159-243)||(29418532-29418617)
chr1 (163-275)||(15468275-15468387)
chr1 (159-255)||(45179279-45179375)
chr1 (221-280)||(25543452-25543511)
chr1 (159-206)||(45426837-45426884)
chr1 (167-292)||(11430500-11430625)
chr1 (222-292)||(32848695-32848765)
chr1 (189-239)||(49730945-49730995)
chr1 (164-233)||(39499450-39499519)
chr1 (167-259)||(31866375-31866466)
chr1 (186-254)||(47644331-47644399)
[»] chr4 (40 HSPs)
chr4 (159-280)||(19937180-19937301)
chr4 (159-286)||(22542432-22542559)
chr4 (167-286)||(39471216-39471335)
chr4 (167-275)||(43771185-43771293)
chr4 (168-292)||(24834638-24834762)
chr4 (167-282)||(722216-722331)
chr4 (167-286)||(8109015-8109134)
chr4 (170-273)||(754595-754698)
chr4 (159-286)||(47009240-47009367)
chr4 (167-286)||(49242229-49242348)
chr4 (164-286)||(20454596-20454716)
chr4 (159-273)||(50164446-50164560)
chr4 (167-286)||(13069999-13070119)
chr4 (170-286)||(26361310-26361426)
chr4 (167-255)||(33653522-33653610)
chr4 (169-281)||(34129407-34129519)
chr4 (166-241)||(13520007-13520082)
chr4 (167-257)||(10169676-10169766)
chr4 (177-255)||(45081775-45081853)
chr4 (167-245)||(48339383-48339461)
chr4 (164-252)||(49077305-49077393)
chr4 (168-286)||(24938417-24938535)
chr4 (193-255)||(37451046-37451108)
chr4 (168-241)||(20225388-20225461)
chr4 (167-275)||(25719125-25719234)
chr4 (167-255)||(5044573-5044661)
chr4 (167-245)||(31250926-31251004)
chr4 (221-275)||(37050641-37050695)
chr4 (201-271)||(40991606-40991676)
chr4 (167-273)||(52671889-52671995)
chr4 (167-232)||(46242000-46242065)
chr4 (167-281)||(39016722-39016837)
chr4 (177-243)||(41153243-41153309)
chr4 (208-273)||(38537528-38537593)
chr4 (198-243)||(54543428-54543473)
chr4 (167-250)||(16178642-16178726)
chr4 (222-286)||(19447246-19447310)
chr4 (167-255)||(29699548-29699635)
chr4 (222-286)||(35179725-35179788)
chr4 (182-242)||(49769850-49769910)
[»] chr8 (30 HSPs)
chr8 (167-255)||(28413902-28413990)
chr8 (167-274)||(1977187-1977294)
chr8 (167-286)||(31301174-31301292)
chr8 (168-283)||(36804844-36804959)
chr8 (167-284)||(24055929-24056046)
chr8 (167-255)||(17499266-17499354)
chr8 (168-239)||(3099691-3099762)
chr8 (167-285)||(8903911-8904029)
chr8 (159-286)||(6387612-6387740)
chr8 (159-255)||(43506586-43506682)
chr8 (167-270)||(9952775-9952878)
chr8 (159-286)||(16983445-16983572)
chr8 (159-292)||(13407319-13407453)
chr8 (167-241)||(23685190-23685264)
chr8 (159-241)||(35797446-35797528)
chr8 (159-274)||(11962696-11962810)
chr8 (174-245)||(35819198-35819269)
chr8 (198-284)||(6098781-6098867)
chr8 (159-241)||(8914822-8914904)
chr8 (159-241)||(45246485-45246567)
chr8 (167-255)||(17741560-17741648)
chr8 (169-287)||(5979941-5980058)
chr8 (167-286)||(35151731-35151850)
chr8 (198-255)||(7493375-7493432)
chr8 (167-243)||(26637586-26637662)
chr8 (18-61)||(11364692-11364735)
chr8 (189-283)||(4674987-4675081)
chr8 (169-271)||(34952504-34952606)
chr8 (189-286)||(9193463-9193560)
chr8 (191-243)||(36629740-36629792)
[»] chr6 (25 HSPs)
chr6 (173-281)||(32598955-32599063)
chr6 (167-280)||(32112725-32112838)
chr6 (167-274)||(21987351-21987458)
chr6 (167-286)||(34905395-34905514)
chr6 (167-255)||(31116157-31116245)
chr6 (159-286)||(5106349-5106476)
chr6 (174-281)||(10133165-10133272)
chr6 (167-255)||(445877-445965)
chr6 (159-259)||(17144700-17144800)
chr6 (167-243)||(32122854-32122930)
chr6 (167-286)||(16851975-16852094)
chr6 (167-281)||(16436124-16436237)
chr6 (168-274)||(12780773-12780879)
chr6 (167-292)||(19090210-19090336)
chr6 (159-281)||(12753767-12753889)
chr6 (182-255)||(16187465-16187538)
chr6 (182-255)||(16187683-16187756)
chr6 (159-255)||(2675946-2676042)
chr6 (159-215)||(12327278-12327334)
chr6 (220-286)||(1392739-1392805)
chr6 (189-271)||(8441866-8441948)
chr6 (189-271)||(8450670-8450752)
chr6 (168-241)||(12784986-12785059)
chr6 (203-291)||(19737431-19737520)
chr6 (165-286)||(35128728-35128846)
[»] chr5 (30 HSPs)
chr5 (167-275)||(34384704-34384812)
chr5 (159-285)||(28223779-28223905)
chr5 (167-275)||(30325887-30325995)
chr5 (167-281)||(28490729-28490843)
chr5 (167-255)||(5413770-5413858)
chr5 (167-283)||(25919270-25919386)
chr5 (167-255)||(28090262-28090350)
chr5 (159-241)||(34368411-34368493)
chr5 (172-284)||(1923556-1923668)
chr5 (159-255)||(10950137-10950233)
chr5 (167-259)||(25710501-25710593)
chr5 (164-255)||(37455405-37455495)
chr5 (159-250)||(39246659-39246750)
chr5 (167-241)||(27592499-27592573)
chr5 (159-241)||(43405444-43405526)
chr5 (176-245)||(17434892-17434961)
chr5 (186-286)||(4714827-4714927)
chr5 (167-243)||(36337935-36338011)
chr5 (159-251)||(10142013-10142105)
chr5 (167-274)||(41330407-41330514)
chr5 (167-241)||(17537149-17537223)
chr5 (159-255)||(28434851-28434945)
chr5 (167-251)||(42224627-42224712)
chr5 (159-215)||(43541902-43541958)
chr5 (228-275)||(2935449-2935496)
chr5 (171-242)||(31885877-31885948)
chr5 (167-281)||(41105577-41105691)
chr5 (163-239)||(25630862-25630938)
chr5 (174-286)||(28611780-28611892)
chr5 (167-286)||(40971454-40971574)
[»] chr3 (44 HSPs)
chr3 (167-255)||(18427183-18427271)
chr3 (167-275)||(20791355-20791463)
chr3 (167-286)||(41451897-41452016)
chr3 (168-255)||(46450125-46450213)
chr3 (167-286)||(14236078-14236197)
chr3 (167-286)||(24734764-24734883)
chr3 (167-286)||(52123958-52124077)
chr3 (167-284)||(28529312-28529427)
chr3 (164-274)||(38414703-38414813)
chr3 (168-271)||(2419481-2419584)
chr3 (172-259)||(10948589-10948676)
chr3 (182-281)||(38138589-38138688)
chr3 (159-286)||(48351487-48351614)
chr3 (167-281)||(20493452-20493566)
chr3 (173-255)||(55452048-55452130)
chr3 (159-275)||(29588746-29588862)
chr3 (167-255)||(46161006-46161094)
chr3 (177-255)||(752461-752539)
chr3 (167-281)||(8824986-8825100)
chr3 (159-273)||(50156675-50156789)
chr3 (159-286)||(27243096-27243224)
chr3 (167-255)||(37776736-37776824)
chr3 (159-241)||(13809132-13809215)
chr3 (162-241)||(29755554-29755633)
chr3 (177-255)||(742025-742103)
chr3 (159-237)||(41707490-41707568)
chr3 (164-225)||(7419241-7419302)
chr3 (169-281)||(24748916-24749029)
chr3 (177-275)||(30355141-30355241)
chr3 (159-243)||(44844032-44844117)
chr3 (167-255)||(19345033-19345121)
chr3 (159-235)||(22604611-22604687)
chr3 (167-239)||(26310495-26310567)
chr3 (188-255)||(24429058-24429125)
chr3 (168-259)||(41607471-41607562)
chr3 (172-286)||(39186028-39186142)
chr3 (159-211)||(30624682-30624734)
chr3 (168-254)||(20586885-20586971)
chr3 (167-292)||(37600125-37600251)
chr3 (167-213)||(43657071-43657117)
chr3 (183-241)||(49072080-49072138)
chr3 (164-245)||(50661564-50661646)
chr3 (203-286)||(22856238-22856319)
chr3 (191-255)||(43016496-43016560)
[»] scaffold0204 (1 HSPs)
scaffold0204 (167-245)||(26905-26983)
[»] scaffold0057 (1 HSPs)
scaffold0057 (159-283)||(42931-43056)
[»] scaffold0194 (1 HSPs)
scaffold0194 (224-286)||(8413-8475)
[»] scaffold0543 (1 HSPs)
scaffold0543 (167-249)||(9723-9805)
[»] scaffold0492 (1 HSPs)
scaffold0492 (167-249)||(11269-11351)
[»] scaffold0016 (1 HSPs)
scaffold0016 (222-286)||(204710-204774)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 42863715 - 42863595
Alignment:
Q  16 accatcattcctctattaatgcacaatctaagcttccttaattttaaaatcactagcaagatgttcatttgcctcaacgtataatattacaccaagtgga 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  42863715 accatcattcctctatttatgcacaatctaagcttccttaattttaaaatcactagcaagatgttcatttgcctcaacgtataatattatactaagtgga 42863616  T
Q  116 ggaatgctagcaacacacact 136  Q
    |||||||||||||||| ||||    
T  42863615 ggaatgctagcaacactcact 42863595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 6442224 - 6442330
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||||||||||||||||| |  ||| |||| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  6442224 aaatcaatgtatgttccaccattttgtggggattcaattttcaaagtgtagacccacaatgatttaaaccaataaaagagtgagtattaaagatagtgtt 6442323  T
Q  267 caaaaga 273  Q
    |||||||    
T  6442324 caaaaga 6442330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 7459399 - 7459494
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaaga 259  Q
    ||||||||||||||| |||||||| ||| |||||| || |||| |||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  7459399 ataaaatcaatgtatattccaccactttatgtgagctcaattttcaaaatatagatccacaataatttaaaccaataaaagagtgagtattaaaga 7459494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 27888333 - 27888466
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||||| |||||| |||||||| |||| ||||  ||||| |||| |||||||||||||||||||||| ||| ||||| ||| ||    
T  27888333 attggataaaatcaatgtatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtgttagag 27888432  T
Q  259 ataatgttcaaaagagattgttgttagctttcct 292  Q
    | | || |||||||||| ||||| |||| |||||    
T  27888433 agagtgctcaaaagagagtgttgctagcattcct 27888466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 22189998 - 22190117
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||  |||||| |||||||| |||| |||| |||||| |||| || |||||||||||||||||||| || ||||||||| |||   ||||    
T  22189998 aaatcaatgtatggcccaccactttgtgtgggttcaattttcaaagtgtagacccgcaatgatttaaaccaataaacgagtgagtattagagagggtgtt 22190097  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||||||||    
T  22190098 caaaagagagtgttgttagc 22190117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 33008163 - 33008252
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaa 256  Q
    |||||| ||||||| |||||| |||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||  |||||||||    
T  33008163 aaatcattgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccacaatgatttaaaccaataaaagagagagtattaa 33008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 27949332 - 27949451
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||  ||||| | |||||||||||||||||| | || |||||| |||| |||||||||||||||| ||||| ||| ||||||||| ||| | ||||    
T  27949332 aaatcaagttatgtcctaccattttgtgtgagttcaaatttcaaagtgtagacccacaatgatttaaactaataagagagtgagtattagagagagtgtt 27949431  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  27949432 caaaagagagtgttgctagc 27949451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 39254134 - 39254261
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||||||||||| |||||||||| ||||| |||||||  |||| ||||  ||| | |||| ||||||| ||||||| |||||| ||| ||||| ||||||    
T  39254134 attgaataaaattaatgtatgtttcaccactttgtgttggttcaatttttaaaatgtagacccacaataatttaaatcaataagagagtgagtgttaaag 39254233  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    | | ||||||||||||| ||||||||||    
T  39254234 agagtgttcaaaagagaatgttgttagc 39254261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 46517342 - 46517469
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||| | |||||||| |||| | |||| |||| |||||| ||||  ||||||||||||||||||||| ||| ||||||||| ||    
T  46517342 attggataaaatcaatgtatatcccaccattctgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagagaatgagtattagag 46517441  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    |   ||||||||||||| ||||| ||||    
T  46517442 aggctgttcaaaagagagtgttgctagc 46517469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 10934094 - 10933968
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||| ||| |||||  ||||| ||||| ||  |||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||     
T  10934094 attggataaaattaatatatgtctcaccactttgtatggtttctatttccaaagtataaacccacaatgatttaaactaataagagattgagtattaaaa 10933995  T
Q  259 ataatgttcaaaagagattgttgttag 285  Q
    | |  |||||||||||| ||| |||||    
T  10933994 agagcgttcaaaagagaatgtcgttag 10933968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 32205135 - 32205241
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| | ||||||||||||| |||| ||||  ||||||||| || |||||||||||||| ||||| ||| ||||||||| |||  |||||    
T  32205135 aaatcaatgtatgtcctaccattttgtgtgggttcaatttttaaagtataggtctacaatgatttaaactaataagagagtgagtattagagaggatgtt 32205234  T
Q  267 caaaaga 273  Q
    |||||||    
T  32205235 caaaaga 32205241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 7775059 - 7775177
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||||||||||||| |||| |||||| | || ||| |||||||||||| |||||  || ||| ||||| ||| | ||||    
T  7775059 aaatcaatgtatgtcccaccactttgtgtgagttcaattttcaaagtgtgga-ccagaatgatttaaacaaataagtgagtgaatattagagagagtgtt 7775157  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||||||||    
T  7775158 caaaagagaatgttgttagc 7775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 23564164 - 23564078
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    |||||||||||| |||||||||  ||||| ||||| |||||||||||| |||||| |||||||||  | ||||||||||||||||||    
T  23564164 attgaataaaattaatgtatgtcgcaccactttgtatgagttctattttcaaagtgtagatccactgtaatttaaaccaataaaaga 23564078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 11824130 - 11824247
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| ||||||||||||||   ||| |||| |||||| || | ||||||||||||||| |||||| | | ||||||||  ||| | ||||    
T  11824130 aaatcaatgtatgtcccaccattttgtgtagcttcaattttcaaagtgtaaacccacaatgatttaaatcaataagaaagtgagtatt--agagagtgtt 11824227  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||||||||    
T  11824228 caaaagagagtgttgttagc 11824247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 44350892 - 44350804
Alignment:
Q  198 gttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||| |||| |||||| ||||  |||||||||||||||||| |||||| ||||||||| ||||  ||||||||||||| ||||||||||    
T  44350892 gttcaattttcaaagtgtagactcacaatgatttaaaccaacaaaagagtgagtattagagatggtgttcaaaagagagtgttgttagc 44350804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 9648982 - 9649057
Alignment:
Q  166 aaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||||||||||| |||||| | ||||| ||||||| || || | ||||||||||||||||||||||    
T  9648982 aaaatcaatgtatgttccaccactttgtgcgggttctgtttccaatgtgtatacccacaatgatttaaaccaataa 9649057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 19422921 - 19422850
Alignment:
Q  201 ctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaag 272  Q
    |||||| | |||| ||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||    
T  19422921 ctattttcgaagtgtagatccacaatgatttaaaccaataaaagagtgagtatcagagatagtgttcaaaag 19422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 25686956 - 25686842
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||   |||| ||| | || |||| |||| |||||| |||| |||||||||||||||||||||| | | ||||||||| | | ||||||    
T  25686956 aaatcaatgtatgtcataccactttttatgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagataatgagtattagaaagaatgtt 25686857  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  25686856 caaaagagagtgttg 25686842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 31502585 - 31502511
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||||| |||||| ||||||||||||||| |||| |||| |||||| ||||  |||||||||||||||||||||    
T  31502585 aaatcaaggtatgtcccaccattttgtgtgcgttcaattttcaaagtgtagactcacaatgatttaaaccaataa 31502511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 6580120 - 6580004
Alignment:
Q  170 tcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaa 269  Q
    |||||||||||  ||| | |||||||  |||| |||| |||| ||| || ||||||| |||||||||||||| ||| ||||||||| ||| | |||||||    
T  6580120 tcaatgtatgtctcactactttgtgtaggttcaattttcaaaatatggacccacaataatttaaaccaataagagagtgagtattagagagagtgttcaa 6580021  T
Q  270 aagagattgttgttagc 286  Q
    |||||| ||||| ||||    
T  6580020 aagagagtgttggtagc 6580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 17813895 - 17813796
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||  |||||| ||||||||||||||||||| |||||||      |||||||||||||||||||||||| | | | ||||||| | ||||    
T  17813895 aaatcaatgtatgc-ccaccactttgtgtgagttctatttctaaagtat------acaatgatttaaaccaataaaagaataaatgttaaagagagtgtt 17813803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 25428600 - 25428485
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||  ||||||||||| ||||||| ||| |||||| | ||||||||||| |||||  |||||| | ||     
T  25428600 aaatcaatgtatgtcccaccactttatgtgggttacatttccaaagtgtagatcctacattgattttatccaataaaagagtgagtgctaaagagagtgc 25428501  T
Q  266 tcaaaagagattgttg 281  Q
    |||||||||| |||||    
T  25428500 tcaaaagagagtgttg 25428485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 32471252 - 32471338
Alignment:
Q  18 catcattcctctattaatgcacaatctaagcttccttaattttaaaatcactagcaagatgttcatttgcctcaacgtataatatta 104  Q
    ||||||| ||||||| |||||||||| |||||||||| ||||||  ||||||| | | |||| |||||||||||||  |||||||||    
T  32471252 catcatttctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatatta 32471338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 36845627 - 36845569
Alignment:
Q  183 caccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||| |||||||| |||| |||| ||||||||||| ||||||||||||||||||||||    
T  36845627 caccaatttgtgtgggttcaattttcaaagtatagacccacaatgatttaaaccaataa 36845569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 48374550 - 48374441
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagat 276  Q
    |||| |||||| ||| | || |||||||||||||||| || |  |||||| ||||||||||| || ||| ||||||||| ||| | |||||||||||||     
T  48374550 atgtcccaccactttctatgggttctatttccaaagtgtatactcacaataatttaaaccaacaagagagtgagtattagagagagtgttcaaaagagag 48374451  T
Q  277 tgttgttagc 286  Q
    ||||| ||||    
T  48374450 tgttgctagc 48374441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 45909515 - 45909635
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||| | ||| ||| ||| |||||| | ||||||||||| ||||| ||| ||| | | |    
T  45909515 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaattgtaggtcctacattgattttacccaataaaagagtgagtgttagagagagtat 45909614  T
Q  266 tcaaaagagattgttgttagc 286  Q
    |||||||||| ||||| ||||    
T  45909615 tcaaaagagagtgttgctagc 45909635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 12263556 - 12263469
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||||||| ||| || |||||||  | || |||| |||||| |||| |||||||||||||||||||||| | | |||||||||    
T  12263556 aatcaatgtatgtcccatcactttgtgtaggatcaattttcaaagtgtagacccacaatgatttaaaccaataagatagtgagtatta 12263469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 14795190 - 14795297
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||| |||  |||| ||||  ||||| || ||||| |||||||||||| ||||| ||| ||||||| | ||| | ||||    
T  14795190 aaatcaatgtatgtcccaccaatttttgttggttcaatttttaaagtgtatatccataatgatttaaactaataagagagtgagtataagagagagtgtt 14795289  T
Q  267 caaaagag 274  Q
    ||||||||    
T  14795290 caaaagag 14795297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 15242182 - 15242289
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||| |||  |||| ||||  ||||| || ||||| |||||||||||| ||||| ||| ||||||| | ||| | ||||    
T  15242182 aaatcaatgtatgtcccaccaatttttgttggttcaatttttaaagtgtatatccataatgatttaaactaataagagagtgagtataagagagagtgtt 15242281  T
Q  267 caaaagag 274  Q
    ||||||||    
T  15242282 caaaagag 15242289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 25092781 - 25092706
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    ||||||||||||| | || | ||||||||||||| |||| | |||||||||  |||||| ||||||||||||||||    
T  25092781 aatcaatgtatgtcctactactttgtgtgagttcaattttctaagtatagacacacaataatttaaaccaataaaa 25092706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 31731367 - 31731288
Alignment:
Q  176 tatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||| |||||||  |||||||||||||| |||||| || | || |||||||||||||| | | |||||||||    
T  31731367 tatgttccaccactttgtgtatgttctatttccaaaatatagacccgcgataatttaaaccaataagaaaatgagtatta 31731288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 1316342 - 1316431
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||| | ||||| ||  || |||||| ||||| || ||  |||||||||||||||||||||||| ||||||||| ||| ||||||    
T  1316342 atgttccacaactttgtatggattgtatttctaaagtgtacatttacaatgatttaaaccaataaaagagtgagtattagagaaaatgtt 1316431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 17354648 - 17354571
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaa 243  Q
    |||||||||||||| |||||| ||| |||| |||||||||||||||| ||| ||| ||| |||||| | |||||||||    
T  17354648 aaatcaatgtatgtcccaccactttatgtgggttctatttccaaagtgtaggtcctacattgattttacccaataaaa 17354571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 31628078 - 31628163
Alignment:
Q  187 attttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaag 272  Q
    ||||||| || |||||||||  ||||| | || | || ||||||||||||||||| ||| | ||||||||||||| ||||||||||    
T  31628078 attttgtttgggttctatttataaagtgttgacctacgatgatttaaaccaataagagagtaagtattaaagatagtgttcaaaag 31628163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 21963236 - 21963172
Alignment:
Q  182 ccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaaga 245  Q
    |||||||||| ||||||||| ||||||||||| ||||||| ||| |||||| | |||||||||||    
T  21963236 ccaccattttatgtgagttccatttccaaagtgtagatcctacattgatttcacccaataaaaga 21963172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 1688048 - 1688127
Alignment:
Q  173 atgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagta 252  Q
    ||||||||  ||||| ||||  |||||| |||||||||||| |||| | |||| ||||||| ||||||||||| ||||||    
T  1688048 atgtatgtctcaccactttgcatgagttttatttccaaagtgtagacctacaacgatttaacccaataaaagagtgagta 1688127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 11692238 - 11692352
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| | |||| |||||||  |||| |||| |||||| || |  |||| |||||||||| ||||  ||| ||||||||| |||   ||||    
T  11692238 aaatcaatgtatgtcctaccactttgtgtaggttcaattttcaaagtgtaaactcacagtgatttaaactaatatgagagtgagtattagagagtgtgtt 11692337  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  11692338 caaaagagagtgttg 11692352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 13919839 - 13919965
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||| |||| |||||| ||| ||| ||| |||||| | |||||||| || |||||  || ||| | ||     
T  13919839 aaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaatgagtgagtgctagagagagtgc 13919938  T
Q  266 tcaaaagagattgttgttagctttcct 292  Q
    |||||||||| ||||| |||| |||||    
T  13919939 tcaaaagagagtgttgctagcattcct 13919965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 32212938 - 32212872
Alignment:
Q  220 ccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||||||||||||||||||||| ||| ||||||||| | |   ||||||||||||| ||||| ||||    
T  32212938 ccacaatgatttaaaccaataagagagtgagtattatatagggtgttcaaaagagagtgttgctagc 32212872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 19494460 - 19494383
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaa 243  Q
    |||||||||||||| |||||| ||| |||| |||| |||| |||||| ||||||| ||| |||||| | |||||||||    
T  19494460 aaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtagatcctacattgatttcacccaataaaa 19494383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 12271045 - 12271096
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagat 219  Q
    |||||||||||||| |||||| |||||||| ||||||||| |||||| |||||    
T  12271045 aaatcaatgtatgtcccaccactttgtgtg-gttctattttcaaagtgtagat 12271096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 27872 - 27978
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||||||| | |||||    
T  27872 aatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagacccacaatgatttaaaccaataagagagtgagtattaaagagagtgttc 27971  T
Q  268 aaaagag 274  Q
    |||||||    
T  27972 aaaagag 27978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 44274285 - 44274418
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||||| |||||| |||||||| |||| | || |||||| ||||||||||||||||||||||||||| ||| ||||| ||| ||    
T  44274285 attggataaaatcaatgtatgtcccaccactttgtgtgggttcaactttcaaagtgtagatccacaatgatttaaaccaataacagagtgagtgttagag 44274384  T
Q  259 ataatgttcaaaagagattgttgttagctttcct 292  Q
    | ||| || |||||||| |||||||||| |||||    
T  44274385 agaatatttaaaagagagtgttgttagcattcct 44274418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 12989250 - 12989369
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||||| ||  |||||||||| |||| |||| |||||||||||||||||||||| ||| ||||||||| ||| | ||||    
T  12989250 aaatcaatgtatgtcccaccactttgtatggattctatttccgaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 12989349  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  12989350 caaaagagagtgttgctagc 12989369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 6980241 - 6980127
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||| |||||||| |||| ||||||||||||| |||| ||||||||||| |||||||||||| ||| ||||| ||| ||||||||| ||| | ||||    
T  6980241 aaatcaaggtatgttctaccactttgtgtgagttcaattttcaaagtatagacccacaatgatttcaactaataagagagtgagtattagagaaagtgtt 6980142  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  6980141 caaaagagagtgttg 6980127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 10981569 - 10981665
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||| |||  ||||||||| |||||| |||||||| ||||||||||||| || |||| |||||||||||||||||||||| ||| |||||||||    
T  10981569 attgaatgaaaaaaatgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccacaatgatttaaaccaataagagagtgagtatta 10981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 37652366 - 37652252
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||||||||  |||||||  |||| |||||||| || ||||| ||||||||||||||||||||||| | ||| ||| | ||| ||||||    
T  37652366 aaatcaatgtatgttccacccctttgtgtatgttcaatttccaacgtgtagattcacaatgatttaaaccaataaaaaagtgaatataagagagaatgtt 37652267  T
Q  267 caaaagagattgttg 281  Q
    |||| ||||| ||||    
T  37652266 caaatgagatggttg 37652252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 11539490 - 11539598
Alignment:
Q  173 atgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaa-tgatttaaaccaataaaagattgagtattaaagataatgttcaaaa 271  Q
    |||||||||||| || |||||||||||||||||| |||||| |||||||| || |||||||||||||||| ||| ||||||||| ||| | |||  ||||    
T  11539490 atgtatgttccatcactttgtgtgagttctattttcaaagtgtagatccagaattgatttaaaccaataagagagtgagtattagagagagtgtgtaaaa 11539589  T
Q  272 gagattgtt 280  Q
    |||| ||||    
T  11539590 gagaatgtt 11539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 43414414 - 43414502
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||||| ||||||||| || ||| |||||| || |||||||||||||||||||||||||||| || ||  |||||||||    
T  43414414 aaatcaatgtatgttctaccattttgcgtaagtgctattttcagagtatagatccacaatgatttaaaccaagaagagggtgagtatta 43414502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 472262 - 472171
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgtt 280  Q
    ||||||||||||| |||| |||| |||| |||||||||||||||||||||||| |||  |||||||||||| | || |||||||| ||||||    
T  472262 tttgtgtgagttcaattttcaaaatatatatccacaatgatttaaaccaataagagagcgagtattaaagagagtgctcaaaagaaattgtt 472171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 25238402 - 25238279
Alignment:
Q  164 ataaaatcaatgtatgttccaccattt-tgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataa 262  Q
    |||||||||||||||||  || || || | |||| ||||||||| |||||| ||||||||||||||||||||||||||||| | |||||  || ||| |     
T  25238402 ataaaatcaatgtatgtctcatcacttctttgtgggttctattttcaaagtgtagatccacaatgatttaaaccaataaaaaagtgagtgctagagaaag 25238303  T
Q  263 tgttcaaaagagattgttgttagc 286  Q
    |||| |||||||| ||||||||||    
T  25238302 tgtttaaaagagagtgttgttagc 25238279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 26767882 - 26767763
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| |||||| | |||| |||| |||| | ||||  ||||||||||||||||||||||||| ||||||||| | | | ||||    
T  26767882 aaatcaatgtatgtcccaccactttgtgagggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagagtgagtattagatagagtgtt 26767783  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||| | ||||| ||||    
T  26767782 caaaagaaagtgttgctagc 26767763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 9470140 - 9470228
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| |||||| ||||| || |||| |||| |||||| |||| |||||||||||||||||||||| ||| ||| |||||    
T  9470140 aaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgaatatta 9470228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 13266885 - 13266817
Alignment:
Q  17 ccatcattcctctattaatgcacaatctaagcttccttaattttaaaatcactagcaagatgttcattt 85  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| | |||| |||||    
T  13266885 ccatcattcctctatttatgcacaatccaagcttccttaattttaaaattactagccacatgtccattt 13266817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 24895391 - 24895303
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaagattgagt 251  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||||| || || ||||| |||||||| ||||| ||||| |||||    
T  24895391 ataaaatcaatgtatattccaccattttatgtgagttccatttccaaagtgtatgacccacattgatttaacccaatgaaagagtgagt 24895303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 38464222 - 38464330
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||  || || |||| ||| |||| |||| |||||| |||| |||||||||||||||||||||| ||| | ||||||| ||| | ||||    
T  38464222 aaatcaatgtatgtctcatcactttgcgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtattagagagagtgtt 38464321  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  38464322 caaaagaga 38464330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 14489618 - 14489552
Alignment:
Q  209 aaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagaga 275  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||| ||| ||| |||||||||||    
T  14489618 aaagtgtagatccacaataatttaaaccaataaaagaatgagtattagagaaaattttcaaaagaga 14489552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 45554661 - 45554735
Alignment:
Q  210 aagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgtta 284  Q
    |||| |||| |||||||||||||||||||||| | | ||||||||| ||| ||||||||||||||| ||||||||    
T  45554661 aagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagaatgttcaaaagagagtgttgtta 45554735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 32856256 - 32856168
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||| ||| |||||| ||||| |||||||| |||  |||| |||||| |||||||| | |||||||||||||||| |||||||||||||    
T  32856256 aaattaatatatgtttcaccactttgtgtgggttgaattttcaaagtgtagatccatagtgatttaaaccaataagagattgagtatta 32856168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 7919382 - 7919317
Alignment:
Q  176 tatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||| |||||| ||||||||  ||| |||| |||||| |||||||||||||||||||||||||||    
T  7919382 tatgtcccaccactttgtgtggattcaattttcaaagtgtagatccacaatgatttaaaccaataa 7919317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 34142238 - 34142141
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||||||| |||| |||| |||||| ||||  ||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| ||||||| ||||| ||||    
T  34142238 tttgtgtgggttcaattttcaaagtgtagagtcacaatggtttaaaccaataagagagtgaatattaaagaaaatattctaaagagagtgttgctagc 34142141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 28898158 - 28898038
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||  ||||||||||| ||||||| ||| |||||| | ||||||||||| |||||  |||||| | |      
T  28898158 aaatcaatgtatgtcccaccactttatgtgggtttcatttccaaagtgtagatcctacattgatttcatccaataaaagagtgagtgctaaagagagtac 28898059  T
Q  266 tcaaaagagattgttgttagc 286  Q
    |||||||||| ||||| ||||    
T  28898058 tcaaaagagagtgttgctagc 28898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 15508973 - 15509052
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaaga 245  Q
    |||||||||||||| |||||||||| |||| |||| ||||||||||| ||||||| ||| |||||| | ||||| |||||    
T  15508973 aaatcaatgtatgtcccaccattttttgtgggttccatttccaaagtgtagatcctacattgatttcacccaattaaaga 15509052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 6315717 - 6315843
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    ||||||||||||||||||||| ||| | |  |||| ||||||||||| ||| ||| ||| | ||||   ||||||||||| ||| ||||||| | | ||     
T  6315717 aaatcaatgtatgttccaccactttatataggttccatttccaaagtgtaggtcctacattaattttttccaataaaagagtgaatattaaaaagagtgc 6315816  T
Q  266 tcaaaagagattgttgttagctttcct 292  Q
    |||||||||| |||||||||| |||||    
T  6315817 tcaaaagagagtgttgttagcattcct 6315843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 15884498 - 15884596
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagaga 275  Q
    |||| |||||| |||||||| |||| |||| |||| | |||| ||||||| |||||||||||||| | | ||||||||| ||||  || ||||||||||    
T  15884498 atgtcccaccactttgtgtgggttcaattttcaaaatgtagacccacaattatttaaaccaataagataatgagtattagagattgtggtcaaaagaga 15884596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 18511338 - 18511256
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| ||||||||||||||||| |||| ||||| |||| |||| |||| ||||||  ||| | |||||| |||||||||||||    
T  18511338 attggataaaatcaatgtatgtcccactattttatgtgggttcaattttcaaagtgaagacctacaatgttttaaaccaataa 18511256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 30849296 - 30849370
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||||||||| || |||||| ||||| || |||||||||  |||| ||| ||||||||||||||||| ||||||    
T  30849296 aaatcaatgtacgtcccaccaatttgtatgggttctatttttaaaggataaatccacaatgatttaaatcaataa 30849370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 271
Target Start/End: Complemental strand, 16719551 - 16719447
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||| | |||||||||  |||  |||| |||| |||| | |||| || |||||||||||||||||| || | ||||||||||| | ||||||    
T  16719551 aaatcaatgtatatcccaccatttcatgtaggttcaattttcaaaatgtagacccgcaatgatttaaaccaatacaaaaatgagtattaaacaaaatgtt 16719452  T
Q  267 caaaa 271  Q
     ||||    
T  16719451 aaaaa 16719447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 27494572 - 27494484
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||| |||||||||| ||| | |  ||||  ||| ||||| ||||| || |||||||||||| |||||||||| |||||||||    
T  27494572 aaatcaatgtttgttccaccaatttatataggttcacttttcaaagcatagacccgcaatgatttaaatcaataaaagagtgagtatta 27494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 45270685 - 45270601
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||| ||||||| |||||||||  ||| ||||||||||| ||| ||||  ||||| || |  |||||||||||||||||||||||    
T  45270685 attggataaaattaatgtatgtatcactattttgtgtgaattcgattttgaaagtgtaaactcacaatgatttaaaccaataaaa 45270601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 1110257 - 1110336
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaaga 245  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||||||  ||| ||| |||||| | |||||||||||    
T  1110257 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtatatgtcctacattgatttcacccaataaaaga 1110336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 4552926 - 4552847
Alignment:
Q  202 tatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttg 281  Q
    ||||| ||| || |||| |||||||||||||||||||||| ||| ||||||| | | | |||||||||||| || |||||    
T  4552926 tattttcaatgtgtagacccacaatgatttaaaccaataagagagtgagtatcagaaaaaatgttcaaaagtgagtgttg 4552847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 19639152 - 19639271
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||  || ||  | |||||||||| |||| ||||||  ||| | |||||||||||||||||||| ||| ||| ||||| |||   | ||    
T  19639152 aaatcaatgtatgtctcatcacatagtgtgagttcaattttcaaagtgcagacctacaatgatttaaaccaataagagagtgaatattatagaggctatt 19639251  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||| | ||||||||||    
T  19639252 caaaagaaaatgttgttagc 19639271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 19837745 - 19837864
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||  || ||  | |||||||||| |||| ||||||  ||| | |||||||||||||||||||| ||| ||| ||||| |||   | ||    
T  19837745 aaatcaatgtatgtctcatcacatagtgtgagttcaattttcaaagtgcagacctacaatgatttaaaccaataagagagtgaatattatagaggctatt 19837844  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||| | ||||||||||    
T  19837845 caaaagaaaatgttgttagc 19837864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 25898407 - 25898458
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtataga 218  Q
    |||| ||||||| ||||||||||||| |||||||||||||| ||||| ||||    
T  25898407 aaattaatgtatcttccaccattttgagtgagttctatttctaaagtgtaga 25898458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 42182948 - 42183027
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaaga 245  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| ||| ||| ||| |||||| | |||||||||||    
T  42182948 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaaga 42183027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 30718434 - 30718372
Alignment:
Q  181 tccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||| |||||||||||  || ||||| |||||| ||||  |||||||||||||||||||||||    
T  30718434 tccatcattttgtgtggattgtattttcaaagtgtagactcacaatgatttaaaccaataaaa 30718372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 32701521 - 32701619
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaa 257  Q
    |||| ||||||||||||||| | |||||| ||| |||  |||| ||||  || || || ||||| |||||||||||||||||||| | | |||||||||    
T  32701521 attggataaaatcaatgtatatcccaccactttatgtatgttcaatttttaacgtgtaaatccataatgatttaaaccaataaaaaagtaagtattaaa 32701619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 36471905 - 36471871
Alignment:
Q  221 cacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||||||||||||||||||| |||||||||    
T  36471905 cacaatgatttaaaccaataaaagagtgagtatta 36471871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 25730506 - 25730453
Alignment:
Q  221 cacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagag 274  Q
    |||| |||||||||||||||||||| ||| ||||||| | |||||| |||||||    
T  25730506 cacagtgatttaaaccaataaaagagtgaatattaaaaaaaatgtttaaaagag 25730453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 35316525 - 35316436
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtat 253  Q
    ||||||| ||||||||| |||||||||| |||   ||| ||||  ||| | |||| ||||||||||||||| |||||| ||| |||||||    
T  35316525 ataaaattaatgtatgtcccaccattttatgttgattcaatttttaaattgtagacccacaatgatttaaatcaataagagagtgagtat 35316436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 26980383 - 26980264
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||||||||||||||||| |||| |||| |||| ||||||||||||||||| |||||| ||| ||||||||| ||| | ||||    
T  26980383 aaatcaatgtatgtcccaccattttgtgtgagttcaattttcaaaatatacatccacaatgatttaaatcaataagagagtgagtattatagagagtgtt 26980284  T
Q  267 caaaagagattgttgttagc 286  Q
     |||||||| ||||| ||||    
T  26980283 gaaaagagagtgttgctagc 26980264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 33193109 - 33193212
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| ||||||||||||| | |||| |||| |||||| |||| |||||||||||||||||||||| ||| ||||||||| ||| | ||||    
T  33193109 aaatcaatgtatgtgccaccattttgtgagggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagaatgagtattagagaaagtgtt 33193208  T
Q  267 caaa 270  Q
    ||||    
T  33193209 caaa 33193212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 1093194 - 1093073
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagat----tgagtattaaagataa 262  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||| ||| ||||||||||||||||| ||||| | ||    || |||||||||| |     
T  1093194 aaatcaatgtatgttccaccactttgtatgagttatatttccaaagtgtagttccacaatgatttaaactaataagatatatagtgggtattaaagagag 1093095  T
Q  263 tgttcaaaagagattgttgtta 284  Q
    ||||||| ||||| ||||||||    
T  1093094 tgttcaagagagagtgttgtta 1093073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 19101722 - 19101614
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||| || ||||||||||| |||||| ||||||  ||||||||||||||||||| | | ||||||||| ||| | ||||    
T  19101722 aaatcaatgtatgtcccaccactttatgcgagttctattttcaaagtgtagatctgcaatgatttaaaccaataagaaagtgagtattagagagagtgtt 19101623  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  19101622 caaaagaga 19101614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 286
Target Start/End: Original strand, 8899081 - 8899192
Alignment:
Q  175 gtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagag 274  Q
    |||||| |||||  |||||||| |||| |||| |||||| ||| |||||||| |||||||||||||| ||| ||||||||| ||| | ||||||||||||    
T  8899081 gtatgtcccacccctttgtgtgggttcaattttcaaagtgtaggtccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagag 8899180  T
Q  275 attgttgttagc 286  Q
    ||||||| ||||    
T  8899181 attgttgctagc 8899192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 22540427 - 22540531
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||| || |||||||||||||||||| ||||||| ||||||||||||||||||    | | ||||||||||| | ||||    
T  22540427 aaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaata----agttagtattaaagagagtgtt 22540522  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  22540523 caaaagaga 22540531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 30679035 - 30678907
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataat 263  Q
    ||||||||||||||||| |||||| |||||||| |||| |||| |||||| ||||  ||||||||||||| ||||||| ||| ||||| ||| ||| | |    
T  30679035 ataaaatcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtagactcacaatgatttaagccaataagagagtgagtgttagagagagt 30678936  T
Q  264 gttcaaaagagattgttgttagctttcct 292  Q
    | |||||| ||| ||||| |||| |||||    
T  30678935 gctcaaaaaagagtgttgctagcattcct 30678907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 41948275 - 41948159
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||| ||| |||| |||||||  |||| |||| |||||| || ||||||||||||||||| |||||| ||| ||||| ||| ||    
T  41948275 attggataaaatcaatgtatattctaccactttgtgttggttcaattttcaaagtgtaaatccacaatgatttaaatcaataagagagtgagtgttagag 41948176  T
Q  259 ataatgttcaaaagaga 275  Q
    | | |||||||||||||    
T  41948175 agagtgttcaaaagaga 41948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 41958142 - 41958230
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| ||||||||||||| | |||| |||| |||||| |||| ||||| |||||||||||||||| ||| |||||||||    
T  41958142 aaatcaatgtatgtcccaccattttgtgggggttcaattttcaaagtgtagacccacagtgatttaaaccaataagagagtgagtatta 41958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 44271969 - 44272065
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||| ||||||||||||||||||||||||| |||  |||| |||| |||||| |||| | ||||||||||||| |||||||| | |||||||||    
T  44271969 attgaatgaaatcaatgtatgttccaccattttttgtaggttcaattttcaaagtgtagaacaacaatgatttaaatcaataaaaaaatgagtatta 44272065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 6133745 - 6133632
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||| ||||| ||||||| ||||||| |||| |||| |||||| || | ||||||||||| |||||||||| ||| ||||||||| |||  |||||    
T  6133745 aaatcaatatatgtcccaccatattgtgtgggttcaattttcaaagtctacacccacaatgatt-aaaccaataagagagtgagtattagagaggatgtt 6133647  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  6133646 caaaagagagtgttg 6133632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 8741344 - 8741230
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||  ||| | |||||||| |||| |||| ||||||||| |  ||||||||||||||| ||||| ||| ||||||||| ||| | ||||    
T  8741344 aaatcaatgtatgtctcactaatttgtgtgggttcaattttcaaagtataaacacacaatgatttaaactaataagagagtgagtattagagaaattgtt 8741245  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  8741244 caaaagagagtgttg 8741230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 15523269 - 15523343
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||| |||||| ||| || |||||||||||| ||||| ||||||| |||||||||||||||||||    
T  15523269 aaatcaatgtatgtcccaccactttatgcgagttctatttctaaagtgtagatccgcaatgatttaaaccaataa 15523343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 15531263 - 15531337
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||| |||||| ||| || |||||||||||| ||||| ||||||| |||||||||||||||||||    
T  15531263 aaatcaatgtatgtcccaccactttatgcgagttctatttctaaagtgtagatccgcaatgatttaaaccaataa 15531337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 15928620 - 15928731
Alignment:
Q  173 atgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaag 272  Q
    ||||||||  |||||||||||||||||||||||| ||| || ||||   ||| |||||||||||||||||||| ||||||||  ||| | ||||||||||    
T  15928620 atgtatgtctcaccattttgtgtgagttctattttcaaggtgtagacttacagtgatttaaaccaataaaagagtgagtatt--agagagtgttcaaaag 15928717  T
Q  273 agattgttgttagc 286  Q
    ||| ||||| ||||    
T  15928718 agagtgttggtagc 15928731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 15906462 - 15906577
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||||| ||| || |||||||||  || |||| |||| | |||||  ||||||||||||| ||||||| || ||||||||| ||    
T  15906462 attgcataaaatcaatgtatgt-ccatcactttgtgtgaactcaatttacaaaatgtagatttacaatgatttaaatcaataaacgaatgagtattagag 15906560  T
Q  259 ataatgttcaaaagaga 275  Q
    |||||||| ||||||||    
T  15906561 ataatgttaaaaagaga 15906577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 51732336 - 51732440
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| ||||||| |||||| | ||| ||||||||  |||| ||||||||| | ||||||| |||||||||||||||||| ||||||||| ||| || |||    
T  51732336 aaattaatgtattttccactactttatgtgagtttaattttcaaagtataaacccacaataatttaaaccaataaaagagtgagtattagagaaaacgtt 51732435  T
Q  267 caaaa 271  Q
    |||||    
T  51732436 caaaa 51732440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 6325937 - 6325863
Alignment:
Q  163 aataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaa 238  Q
    |||||||||||||||||| ||||||||||||||||||||| ||| |||||| || | |||||||||| ||||||||    
T  6325937 aataaaatcaatgtatgtcccaccattttgtgtgagttct-ttttcaaagtgtaaacccacaatgatgtaaaccaa 6325863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 32211905 - 32211791
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| | || | ||||||||||||| ||||  || || |||| |||||||||||||||||||||| ||| |||  |||||||| | ||||    
T  32211905 aaatcaatgtatgtccaactactttgtgtgagttcaatttttaaggtgtagacccacaatgatttaaaccaataagagagtgatcattaaagaaagtgtt 32211806  T
Q  267 caaaagagattgttg 281  Q
     |||||||| |||||    
T  32211805 gaaaagagagtgttg 32211791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 37525580 - 37525662
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| |||||| | ||||||||||||||||||| |||| |||| |||| |||||| |||||| |||||||||||||| |||||    
T  37525580 attggataaaacccatgtatgttccaccattttatgtgggttcaattttcaaagtctagatctacaatgatttaaactaataa 37525662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 16948602 - 16948525
Alignment:
Q  215 tagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagctttcct 292  Q
    |||||||||||||||||||| |||||| ||| ||||||||| ||| ||||||||| ||||| ||||| |||| |||||    
T  16948602 tagatccacaatgatttaaatcaataagagagtgagtattagagaaaatgttcaacagagagtgttgctagcattcct 16948525  T

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Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 931437 - 931521
Alignment:
Q  171 caatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||| ||| |||||| |||| |||| |||| |||| |||| | |||||||||||||||||||||||||| ||| |||||    
T  931437 caatgtatgtcccatcattttttgtgggttcaattttcaaaatatacacccacaatgatttaaaccaataaaagagtgaatatta 931521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 29673526 - 29673622
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||| ||||||||||| ||||| ||||||||||||||   ||| |||| |||||| |||| | ||||| |||||||||||||||| | |||||||||    
T  29673526 attggataaaatcaatatatgtcccaccattttgtgtagtttcaattttcaaagtgtagaactacaattatttaaaccaataaaaaagtgagtatta 29673622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 33114030 - 33114106
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||||| ||||||| |||||||||| |||  |||| |||| |||||| |||||||| ||||||||||||||||||||    
T  33114030 aaatcattgtatgtcccaccattttatgtaggttcaattttcaaagtgtagatccagaatgatttaaaccaataaaa 33114106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 39974266 - 39974202
Alignment:
Q  222 acaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||||||||||||||||||| ||| ||||||||| | | ||||||||||||||| ||||||||||    
T  39974266 acaatgatttaaaccaataagagagtgagtattagaaagaatgttcaaaagagagtgttgttagc 39974202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 3872755 - 3872677
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    |||||||| |||||  ||||| |||||||  |||| ||||||||||| |||| ||||||||||| ||||||||||||||    
T  3872755 aaatcaatatatgtcacaccactttgtgtaggttcaatttccaaagtgtagacccacaatgattcaaaccaataaaaga 3872677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 37553035 - 37552964
Alignment:
Q  202 tatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagaga 275  Q
    ||||| |||||| |||||||||||||||||||| |||||| ||| ||||||||||||  | |||||||||||||    
T  37553035 tattttcaaagtgtagatccacaatgatttaaatcaataagagagtgagtattaaag--agtgttcaaaagaga 37552964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 50773240 - 50773123
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaa 257  Q
    |||| ||||||||||| |||||||||||| ||| |||| |||| ||||||||| ||||| ||| ||| | |||| | ||||||||||| |||||  || |    
T  50773240 attggataaaatcaatatatgttccaccactttatgtgggttccatttccaaaatataggtcctacattaattttacccaataaaagaatgagtgctaga 50773141  T
Q  258 gataatgttcaaaagaga 275  Q
    || | |||||||||||||    
T  50773140 gagagtgttcaaaagaga 50773123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 12767422 - 12767330
Alignment:
Q  194 gtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||||||||||||  ||||| ||||  || |||||||||||||||||||||| ||||||||| |||   | ||||||||||||| ||| ||||    
T  12767422 gtgagttctatttttaaagtgtagactcataatgatttaaaccaataaaagagtgagtattagagagggttttcaaaagagatttttgctagc 12767330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 10659889 - 10659771
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||| |||| | |||| |||||||  |||| |||| |||||| |||| |||| ||||||||||||||||| ||| || |||||| ||| | ||||    
T  10659889 aaatcaatggatgtccgaccactttgtgtaggttcaattttcaaagtgtagacccacgatgatttaaaccaataagagagtg-gtattagagaaagtgtt 10659791  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||| | ||||| ||||    
T  10659790 caaaagaaaatgttgctagc 10659771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 11987685 - 11987804
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| |||||||||||||||| || ||| | |||| |||| |||||| |||| |||||||||||||||||| ||| ||| ||  ||||| | | | ||||    
T  11987685 aaattaatgtatgttccaccacttagtgcgggttcaattttcaaagtgtagacccacaatgatttaaaccattaagagagtggatattagaaagagtgtt 11987784  T
Q  267 caaaagagattgttgttagc 286  Q
     |||||||| ||||| ||||    
T  11987785 taaaagagagtgttgctagc 11987804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 2225283 - 2225357
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||| |||||| |||||||| ||||  ||| |||||| |||| | ||| ||||||||||||||||    
T  2225283 aaatcaatgtatgtcccaccactttgtgtgggttcggtttacaaagtgtagaccgacagtgatttaaaccaataa 2225357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 24911522 - 24911588
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaa 233  Q
    ||||| |||||||| |||||| ||| |||| ||| |||||||||||||||||| | |||||||||||    
T  24911522 aaatccatgtatgtcccaccactttttgtgggttttatttccaaagtatagatacgcaatgatttaa 24911588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 11135798 - 11135883
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagt 251  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| ||| ||| ||| |||||| | ||||||||||| |||||    
T  11135798 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaagagtgagt 11135883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 28109927 - 28110015
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||| ||||||||||||||| |||| |||| |||| |||||| ||||||| | |||||||| | ||||||||| | |||||||||    
T  28109927 aaatcaatgcatgttccaccattttatgtgggttccattt-caaagtgtagatcctagaatgatttcatccaataaaaaagtgagtatta 28110015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 29418532 - 29418617
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaa 243  Q
    |||| ||||||| ||||||| |  ||||| ||| ||||||||||||||||||||| ||||||| ||| |||||| | |||||||||    
T  29418532 attggataaaattaatgtatatctcaccactttatgtgagttctatttccaaagtgtagatcctacattgatttcacccaataaaa 29418617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 15468275 - 15468387
Alignment:
Q  163 aataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataa 262  Q
    |||| |||||||||||||  ||  | |||||||| |||| |||| || ||| |||| ||||||| |||||||  ||||||||| | ||||||  |||||     
T  15468275 aatagaatcaatgtatgtctcattactttgtgtgggttcaattttcatagtgtagacccacaataatttaaattaataaaagagtaagtatttgagatag 15468374  T
Q  263 tgttcaaaagaga 275  Q
    |||||||||||||    
T  15468375 tgttcaaaagaga 15468387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 45179375 - 45179279
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||||||||||||||| || |||||| | |||| |||| |||||| || | ||||||| | |||||  ||||| | | |||||||||    
T  45179375 attgaataaaatcaatgtatgttccatcactttgtgagggttcaattttcaaagtgtaaacccacaataacttaaattaataagaaaatgagtatta 45179279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 25543452 - 25543511
Alignment:
Q  221 cacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgtt 280  Q
    ||||||||||||||||||||| | | ||||||||| ||| | ||||||||||||| ||||    
T  25543452 cacaatgatttaaaccaataagatagtgagtattagagagagtgttcaaaagagagtgtt 25543511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 45426884 - 45426837
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctattt 206  Q
    ||||||| |||| |||||||||||||||||||| |||| |||||||||    
T  45426884 attgaatgaaattaatgtatgttccaccattttatgtgtgttctattt 45426837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 11430500 - 11430625
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| ||| ||| ||| ||| ||  |||||||||||| |||||  || ||| | ||     
T  11430500 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgaatt-caccaataaaagagtgagtgctagagagagtgc 11430598  T
Q  266 tcaaaagagattgttgttagctttcct 292  Q
    |||||||||| ||||| |||| |||||    
T  11430599 tcaaaagagagtgttgctagcattcct 11430625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 32848695 - 32848765
Alignment:
Q  222 acaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagctttcct 292  Q
    |||||||||| | ||||||||||| |||||  || ||| | ||||||||||||| |||||||||| |||||    
T  32848695 acaatgatttcacccaataaaagagtgagtgctagagagagtgttcaaaagagagtgttgttagcattcct 32848765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 49730945 - 49730995
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaat 239  Q
    |||||||| |||| |||| |||||| |||| ||||||||||||||||||||    
T  49730945 tttgtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaat 49730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 39499450 - 39499519
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaa 233  Q
    |||||||||||||||||   | || ||| ||||||||| |||| |||| | |||||||||||||||||||    
T  39499450 ataaaatcaatgtatgtcatatcactttttgtgagttcaattttcaaaatgtagatccacaatgatttaa 39499519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 31866375 - 31866466
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaaga 259  Q
    |||||||||||||| |||| ||||| ||   |||| ||||  ||||| || |||||||||||||||||| ||||| | | |||||||||||||    
T  31866375 aaatcaatgtatgtcccactattttttgaaggttcaatttttaaagtgta-atccacaatgatttaaactaataagaaagtgagtattaaaga 31866466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 47644399 - 47644331
Alignment:
Q  186 cattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatt 254  Q
    ||||||||||| ||||||||| ||| || || | ||||||||||||||| |||||| |||  |||||||    
T  47644399 cattttgtgtgggttctattttcaatgtgtaaacccacaatgatttaaatcaataagagagcgagtatt 47644331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 19937301 - 19937180
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||| ||||||||||||| |||||||| | |||||||||||||| ||||||||||||| ||||||||| ||||||| |||||| |||| |||||||    
T  19937301 attggatacaatcaatgtatgtcccaccattatatgtgagttctattttcaaagtatagatcgacaatgattcaaaccaacaaaagagtgagaattaaag 19937202  T
Q  259 ataatgttcaaaagagattgtt 280  Q
    | | |||| |||||||| ||||    
T  19937201 agagtgtttaaaagagagtgtt 19937180  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 22542432 - 22542559
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    ||||||| ||||||| ||||||||||||| |||||||| |||| |||| ||||| ||||  |||||||||||||||| ||||| ||| |||||||||||     
T  22542432 attgaatgaaatcaaagtatgttccaccactttgtgtgggttcaattttcaaagaatagtcccacaatgatttaaactaataagagagtgagtattaaaa 22542531  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    | | ||||||||||| | ||||||||||    
T  22542532 agagtgttcaaaagatagtgttgttagc 22542559  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 39471216 - 39471335
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| |||||||  |||| || | |||||| |||| |||||||||||||||||||||| ||| ||||||||| ||| ||||||    
T  39471216 aaatcaatgtatgtcccaccactttgtgttggttcaatcttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagaatgtt 39471315  T
Q  267 caaaagagattgttgttagc 286  Q
     |||||||| ||||||||||    
T  39471316 taaaagagagtgttgttagc 39471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 43771185 - 43771293
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| | |||||| |||| |||| |||||| |||| |||||||||||||||||||||| ||| |||||||||||||   ||||    
T  43771185 aaatcaatgtatgtcccaccactctgtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattaaagagggtgtt 43771284  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  43771285 caaaagaga 43771293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 24834638 - 24834762
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||||||||| ||| ||| ||||| ||| |  |||     
T  24834638 aatcaatgtatgtcccaccattttgtgtgggttcaattttcaaagtgtagacccacaataatttaaaccaataagagagtgactattagagagagagttt 24834737  T
Q  268 aaaagagattgttgttagctttcct 292  Q
    |||||||| ||||| |||| |||||    
T  24834738 aaaagagagtgttgctagcattcct 24834762  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 722216 - 722331
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||| |||||| |||||| ||||||| ||||| ||||  ||||| |||| |||||||||||||||||||||| ||| ||||||||| ||| | ||||    
T  722216 aaatcaaagtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 722315  T
Q  267 caaaagagattgttgt 282  Q
    ||||||| | ||||||    
T  722316 caaaagaaagtgttgt 722331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 8109015 - 8109134
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||| | |||||||  |||| |||| |||||| |||| |||||||||||||||||||||| | | ||||||||| ||| | ||||    
T  8109015 aaatcaatgtatgtcccactaatttgtgtttgttcaattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgtt 8109114  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  8109115 caaaagagagtgttgctagc 8109134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 754698 - 754595
Alignment:
Q  170 tcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaa 269  Q
    |||| |||||| |||||| ||||||| ||||| ||||  ||||| |||| |||||||||||||||||||||| ||| ||||||||| ||| | |||||||    
T  754698 tcaaagtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaa 754599  T
Q  270 aaga 273  Q
    ||||    
T  754598 aaga 754595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 47009240 - 47009367
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||| ||||| |||  ||||  ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||| | | ||||||||| ||    
T  47009240 attggataaaattaatgtttgtctcaccgctttgtgtgagttcaattttcaaagtgtagatacacaatgatttaaaccaataagaaagtgagtattagag 47009339  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    |   ||||||||||||| ||||| ||||    
T  47009340 agggtgttcaaaagagaatgttgctagc 47009367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 49242229 - 49242348
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||| ||||| ||| || |||||||| |||| |||| ||| || ||||| ||||||||||||||||||||| ||| ||||||| | ||| | ||||    
T  49242229 aaatcaatatatgtcccatcactttgtgtgggttcaattttcaatgtgtagattcacaatgatttaaaccaataagagaatgagtatcatagagagtgtt 49242328  T
Q  267 caaaagagattgttgttagc 286  Q
     |||||||| ||||||||||    
T  49242329 taaaagagagtgttgttagc 49242348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 20454596 - 20454716
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataat 263  Q
    ||||||||||||||||| |||| | |||||||  |||| |||| |||||| |||||||||||||||||||| |||||| ||| ||||| ||| ||| | |    
T  20454596 ataaaatcaatgtatgt-ccac-actttgtgttggttcaattttcaaagtgtagatccacaatgatttaaatcaataacagagtgagtgttagagagagt 20454693  T
Q  264 gttcaaaagagattgttgttagc 286  Q
    |||||||||||| ||||| ||||    
T  20454694 gttcaaaagagaatgttgctagc 20454716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 50164446 - 50164560
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||| | ||||||||||||| | |||| |||| |||||| ||||  ||||||||||||||||||||| | | |||| |||| ||    
T  50164446 attggataaaatcaatgtatctcccaccattttgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaagtgagcattagag 50164545  T
Q  259 ataatgttcaaaaga 273  Q
    | | |||||||||||    
T  50164546 agagtgttcaaaaga 50164560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 13069999 - 13070119
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    ||||||||||||||||||||| ||| |||| |||| |||| |||||| ||| ||| ||| |||||| |  |||||||||| ||||| ||| ||| |||||    
T  13069999 aaatcaatgtatgttccaccactttatgtgggttccattttcaaagtgtaggtcctacattgattttactcaataaaagagtgagtgttagagaaaatgt 13070098  T
Q  266 tcaaaagagattgttgttagc 286  Q
    |||||||||| ||||| ||||    
T  13070099 tcaaaagagagtgttgctagc 13070119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 26361426 - 26361310
Alignment:
Q  170 tcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaa 269  Q
    ||||||||||  ||||||||||||||| |||| || | |||||| |||| ||| ||||||||||||||||||  || ||||||||| |||   |||||||    
T  26361426 tcaatgtatgacccaccattttgtgtgggttcaatattcaaagtgtagacccataatgatttaaaccaataagtgagtgagtattagagagggtgttcaa 26361327  T
Q  270 aagagattgttgttagc 286  Q
    |||||| ||||| ||||    
T  26361326 aagagagtgttgctagc 26361310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 33653610 - 33653522
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| ||||||||||||| |  ||| |||| |||| ||| ||||||||||||||||||||||||| | | |||||||||    
T  33653610 aaatcaatgtatgtcccaccattttgtggggtttcaattttcaaaatattgatccacaatgatttaaaccaataagaaagtgagtatta 33653522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 34129519 - 34129407
Alignment:
Q  169 atcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttca 268  Q
    |||||||||| | |||||| |||||||| |||| |||| |||||| | ||  ||||||| ||||||||||||||||| ||||||||| ||||  ||||||    
T  34129519 atcaatgtatatcccaccactttgtgtgtgttcaattttcaaagtgtggactcacaatggtttaaaccaataaaagagtgagtattagagattgtgttca 34129420  T
Q  269 aaagagattgttg 281  Q
     |||||| |||||    
T  34129419 gaagagagtgttg 34129407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 13520007 - 13520082
Alignment:
Q  166 aaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||||||||||| |||||| | ||||| ||||||| || || | ||||||||||||||||||||||    
T  13520007 aaaatcaatgtatgttccaccactttgtgcgggttctgtttccaatgtgtatacccacaatgatttaaaccaataa 13520082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 10169766 - 10169676
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaa 257  Q
    |||||||| ||||| | |||| ||||||||||||| |||| ||||  ||||||||||||| |||||||||||||| ||| ||| |||||||    
T  10169766 aaatcaatatatgtcctaccactttgtgtgagttcaattttcaaaacatagatccacaattatttaaaccaataagagagtgaatattaaa 10169676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 45081853 - 45081775
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||| ||||||||||||| || ||||||||||||| || |  |||||| |||||||||||||||||| |||||||||    
T  45081853 atgttctaccattttgtgtgggtcctatttccaaagtgtacactcacaataatttaaaccaataaaagagtgagtatta 45081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 48339461 - 48339383
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||  |||| ||| |||| |||||||||||||||||    
T  48339461 aaatcaatgtatgttccaccactttgtgtgggttcaattttcaaagcgtagacccataatgctttaaaccaataaaaga 48339383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 49077305 - 49077393
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagta 252  Q
    ||||||| ||| ||||| |||||| |||||||| |||| ||||  ||||| |||| |||||||||||||||||||||| || |||||||    
T  49077305 ataaaattaatatatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataagagtttgagta 49077393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 24938535 - 24938417
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    ||||||||||||| |||||||||||| ||  ||| ||||  ||||| |||| | |||||||||||||||||||| ||| | ||||||| ||| | ||||     
T  24938535 aatcaatgtatgtcccaccattttgtttggattcaatttttaaagtgtagacctacaatgatttaaaccaataagagagtaagtattagagaaagtgttg 24938436  T
Q  268 aaaagagattgttgttagc 286  Q
    |||||| | ||||| ||||    
T  24938435 aaaagataatgttgctagc 24938417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 37451108 - 37451046
Alignment:
Q  193 tgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| |||||| ||||  | ||||||||||||||||||||||| |||||||||    
T  37451108 tgtgagttctattttcaaagtgtagactcgcaatgatttaaaccaataaaagagtgagtatta 37451046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 20225461 - 20225388
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| ||| |||| |||||| ||| |||| |||||||||||||||| ||||  |||||||||||||||||||||    
T  20225461 aatccatgcatgtcccaccactttttgtgggttctatttccaaagtgtagactcacaatgatttaaaccaataa 20225388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 25719234 - 25719125
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatag-atccacaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||  ||||||||| | ||| | |||||||||||||| ||||| | ||| ||||||||| ||| | |||    
T  25719234 aaatcaatgtatgtcccaccactttatgtgggtttcatttccaaaatgtaggacccacaatgatttaacccaatcagagagtgagtattagagaaattgt 25719135  T
Q  266 tcaaaagaga 275  Q
    ||||||||||    
T  25719134 tcaaaagaga 25719125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 5044661 - 5044573
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||| |||||  ||| ||||||||||||||| ||||  ||| | |||| |||||| ||||||||||||||||||| ||| |||||    
T  5044661 aaatcaatatatgtcacactattttgtgtgagttcaatttttaaaatgtagacccacaacgatttaaaccaataaaagaatgaatatta 5044573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 31251004 - 31250926
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    |||||||||||||| |||||||||| ||   |||| |||| |||| | |||| ||||||||||||||| ||||||||||    
T  31251004 aaatcaatgtatgtcccaccattttatggacgttcaattttcaaaatgtagacccacaatgatttaaatcaataaaaga 31250926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 37050695 - 37050641
Alignment:
Q  221 cacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagaga 275  Q
    ||||||||||||||||||||||| | ||||||||||||| | | |||||||||||    
T  37050695 cacaatgatttaaaccaataaaaaaatgagtattaaagagagtattcaaaagaga 37050641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 40991676 - 40991606
Alignment:
Q  201 ctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaa 271  Q
    |||||||  |||| |||| |||||||||||||||||||||||||| ||||||| | ||| | |||||||||    
T  40991676 ctatttctgaagtgtagacccacaatgatttaaaccaataaaagagtgagtatcagagagagtgttcaaaa 40991606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 52671889 - 52671995
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| ||||||||| |||||||||| ||| ||||| ||||  ||||| || || | ||||||||||||| ||||| | | ||||||||||||| | ||||    
T  52671889 aaataaatgtatgtcccaccattttatgtaagttcaatttttaaagtgtaaattctcaatgatttaaactaataagatagtgagtattaaagagagtgtt 52671988  T
Q  267 caaaaga 273  Q
     ||||||    
T  52671989 taaaaga 52671995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 46242065 - 46242000
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgattta 232  Q
    |||||| ||||||| ||||||||||||||  |||| |||| |||| |||||| |||||||||||||    
T  46242065 aaatcattgtatgtcccaccattttgtgtaggttcaattttcaaaatatagacccacaatgattta 46242000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 39016722 - 39016837
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatag-atccacaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| ||||||||||  ||| |||| ||||||||||| ||| ||| ||| |||||| | | ||||||||| | |||  || ||| | |||    
T  39016722 aaatcaatgtatgtcccaccattttacgtgggttccatttccaaagtgtagtatctacattgattttacctaataaaagagtaagtgctagagagagtgt 39016821  T
Q  266 tcaaaagagattgttg 281  Q
    |||||||||| |||||    
T  39016822 tcaaaagagagtgttg 39016837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 41153309 - 41153243
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||| |||||| |||||||  |||||||||| ||||| || || |||||||||||| ||||||||||    
T  41153309 atgtcccaccactttgtgtaggttctatttctaaagtgtacattcacaatgatttagaccaataaaa 41153243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 38537593 - 38537528
Alignment:
Q  208 caaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaaga 273  Q
    |||||| ||||| || ||||||||||| |||||||||| ||| ||||| ||| | |||||||||||    
T  38537593 caaagtgtagattcataatgatttaaatcaataaaagaatgattattagagagagtgttcaaaaga 38537528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 54543428 - 54543473
Alignment:
Q  198 gttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    ||||||||||||| || ||||| || ||||||||||||||||||||    
T  54543428 gttctatttccaatgtgtagattcaaaatgatttaaaccaataaaa 54543473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 16178642 - 16178726
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaagattgag 250  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| || | || ||| |||||| | ||||||||||| ||||    
T  16178642 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggttctacattgatttcatccaataaaagagtgag 16178726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 19447246 - 19447310
Alignment:
Q  222 acaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    ||||||||||||  |||| | ||| ||||||||||||| | ||||||||||||| ||||| ||||    
T  19447246 acaatgatttaactcaattagagagtgagtattaaagagagtgttcaaaagagagtgttgctagc 19447310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 29699548 - 29699635
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||  |||| |||||| |||||||  |||||||||| |||||||||  | ||||||||||||| |||||| ||| ||| |||||    
T  29699548 aaatcaatacatgtcccaccactttgtgttggttctatttc-aaagtatagcccgacaatgatttaaaacaataagagagtgaatatta 29699635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 35179725 - 35179788
Alignment:
Q  222 acaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    ||||||||||| || ||||| ||| ||| ||||||||||| || |||||||||| ||||||||||    
T  35179725 acaatgatttatactaataatagagtgaatattaaagatagtg-tcaaaagagagtgttgttagc 35179788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 49769910 - 49769850
Alignment:
Q  182 ccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaa 242  Q
    |||| ||||| |||||||| ||||| ||||||||| | | |||||||||||||| ||||||    
T  49769910 ccactattttatgtgagttttattttcaaagtataaacctacaatgatttaaactaataaa 49769850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 28413990 - 28413902
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| |||||| ||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  28413990 aaatcaatgtatgtcccaccactttgtgtgagttcaattttcaaagtatagacccataatgatttaaaccaataaaagaatgagtatta 28413902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 1977294 - 1977187
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| | |||| |||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||   ||||    
T  1977294 aaatcaatgtatgtccaaccactttgtgtgggttcaattttcaaagtgtagatccacaatgatttaaaccaataaaagagtgagtattagagagtgtgtt 1977195  T
Q  267 caaaagag 274  Q
    ||||||||    
T  1977194 caaaagag 1977187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 31301174 - 31301292
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| || ||||| || ||| |||||||||||||| ||| ||| ||||  |||||||||     
T  31301174 aaatcaatgtatgttccaccactttgtgtgagttctattttcaatgtgtagat-cataataatttaaaccaataagagaatgaatatttgagataatgta 31301272  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| |||| |||||    
T  31301273 caaaagagagtgttcttagc 31301292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 36804959 - 36804844
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||| |||| ||||||||| ||||||| |||||| ||| | ||||||| ||| ||||||     
T  36804959 aatcaatgtatgtcccaccattttgtgtgggttcaattttcaaaatatacatccacaataatttaaatcaataagagagtaagtattagagagaatgttg 36804860  T
Q  268 aaaagagattgttgtt 283  Q
    |||||||| |||||||    
T  36804859 aaaagagagtgttgtt 36804844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 24056046 - 24055929
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| ||||||||| |||||| ||||||| ||||| |||| |||||| |||| ||||||| |||||||||||||| ||| ||||| ||| ||| | ||||    
T  24056046 aaattaatgtatgtcccaccactttgtgtaagttcaattttcaaagtgtagacccacaattatttaaaccaataagagagtgagtgttagagaaagtgtt 24055947  T
Q  267 caaaagagattgttgtta 284  Q
    ||||||||| ||||||||    
T  24055946 caaaagagagtgttgtta 24055929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 17499354 - 17499266
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||| ||||| ||||||||||||||  |||| |||| |||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  17499354 aaatcaatatatgtcccaccattttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataagagagtgagtatta 17499266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 3099762 - 3099691
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaat 239  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||| ||||||||||||    
T  3099762 aatcaatgtatgttccaccattttgtgtgagttatatttccaaagtatagtctcacaataatttaaaccaat 3099691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 8903911 - 8904029
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| |||||||  |||| |||| |||||| |||| |||||||||||||||||||||| ||| | |||| || | |  |||||    
T  8903911 aaatcaatgtatgtcccaccactttgtgtcggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtaatagaaaagatgtt 8904010  T
Q  267 caaaagagattgttgttag 285  Q
    ||||||||| |||||||||    
T  8904011 caaaagagagtgttgttag 8904029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 6387612 - 6387740
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaagattgagtattaaa 257  Q
    |||| ||||||||||||||||| |||||||||| |||| |||| |||||||||||||| || ||||| || ||||| ||||||| ||| ||||| ||| |    
T  6387612 attggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaagtatacgacccacattgttttaacccaataagagaatgagtgttaga 6387711  T
Q  258 gataatgttcaaaagagattgttgttagc 286  Q
    || | ||| |||||| |||||||| ||||    
T  6387712 gagagtgtccaaaagggattgttgctagc 6387740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 43506586 - 43506682
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||| ||| |||||||||||||||||||| |||||||| |||||| || ||| || |||| |||||||||||||| ||||||| ||| |||||||||    
T  43506586 attggatataatcaatgtatgttccaccactttgtgtgggttctactttcaatgtgtagacccacaatgatttaagccaataagagagtgagtatta 43506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 9952878 - 9952775
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||| |||| |||||| ||||||||||||| |||| |||||| || | |||||||||||||||||||||| | | |||||||| |||| | ||||    
T  9952878 aaatcaatgcatgtcccaccactttgtgtgagttcaattttcaaagtgtaaacccacaatgatttaaaccaataagataatgagtatttaagagagtgtt 9952779  T
Q  267 caaa 270  Q
    ||||    
T  9952778 caaa 9952775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 16983445 - 16983572
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||| | ||||| ||| || |||||| | |||| |||| |||||| ||||  ||||||||||||||||||||| ||| ||||||||| ||    
T  16983445 attggataaaatcattttatgtcccatcactttgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtattagag 16983544  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    | | ||||||||||||| ||||| ||||    
T  16983545 agagtgttcaaaagagagtgttgctagc 16983572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 13407453 - 13407319
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaagattgagtattaaa 257  Q
    |||| ||||||||||||||||| ||||||||||  ||| ||||||||| |||||| || || ||||| |||||||| ||||| | ||| ||||| ||| |    
T  13407453 attggataaaatcaatgtatgtcccaccattttaagtgggttctattttcaaagtgtatgacccacattgatttaacccaatgagagaatgagtgttaga 13407354  T
Q  258 gataatgttcaaaagagattgttgttagctttcct 292  Q
    || | ||||||||||||| ||||| |||| |||||    
T  13407353 gagagtgttcaaaagagagtgttgctagcattcct 13407319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 23685190 - 23685264
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||| |||||| ||| || |||||||||||||||||| ||||| | |||||||||||||||||||    
T  23685190 aaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgtagattcgcaatgatttaaaccaataa 23685264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 35797446 - 35797528
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| |||||||||||||||||||||||| |||||| |||||| ||||  ||||| || ||||||||||||||||| ||||||    
T  35797446 attggataaaatcaatgtatgttccaccactttgtgcgagttcaatttttaaagtgtaaatccacaatgatttaaatcaataa 35797528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 11962810 - 11962696
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    ||||||||||||||| |||| | |||||||||| |||  |||| |||| |||||| |||||||| |||||||||||||||||||| |  |||||||||      
T  11962810 attgaataaaatcaaagtatatcccaccattttatgtaggttcaattttcaaagtgtagatcca-aatgatttaaaccaataaaaaagcgagtattaaca 11962712  T
Q  259 ataatgttcaaaagag 274  Q
    | | ||||||||||||    
T  11962711 agagtgttcaaaagag 11962696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 35819198 - 35819269
Alignment:
Q  174 tgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    ||||||| ||||||||||||||| | || |||| ||||||||||| |||||||||||||||| |||||||||    
T  35819198 tgtatgtcccaccattttgtgtgggctcaattttcaaagtatagacccacaatgatttaaactaataaaaga 35819269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 6098867 - 6098781
Alignment:
Q  198 gttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgtta 284  Q
    |||| |||| |||||| |||||||||||| ||||||| |||||| ||| ||||||||| ||| |||||| |||||||| ||||||||    
T  6098867 gttcaattttcaaagtgtagatccacaataatttaaatcaataagagagtgagtattagagagaatgtttaaaagagagtgttgtta 6098781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 8914822 - 8914904
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| |||||| |||||||||| |||||| |||||||| ||||  ||| |||||| |||| ||||||||||||||||||||||    
T  8914822 attggataaaaccaatgtatgtcccaccactttgtgtgggttcatttttcaaagtgtagacccacaatgatttaaaccaataa 8914904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 45246485 - 45246567
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| |||||||||||||||||  ||||| ||| || |||||||||||||||||| ||||||  |||||||||||| ||||||    
T  45246485 attggataaaatcaatgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaatcaataa 45246567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 17741648 - 17741560
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| ||||||||||||| |||||| |||| |||||| |||| | | |||| ||||||||||||||  | |||||||||    
T  17741648 aaatcaatgtatgtcccaccattttgtgagagttcaattttcaaagtgtagacctataatggtttaaaccaataaagaaatgagtatta 17741560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 5979941 - 5980058
Alignment:
Q  169 atcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttca 268  Q
    |||||||||||| |||||| |||||||| |||| |||| |||||| |  |  ||||||| ||||| ||||||| ||| ||||||||| ||| | ||||||    
T  5979941 atcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtgaactcacaatggtttaa-ccaataagagagtgagtattagagagagtgttca 5980039  T
Q  269 aaagagattgttgttagct 287  Q
    ||||||| ||||| |||||    
T  5980040 aaagagagtgttgctagct 5980058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 35151850 - 35151731
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| ||||||||||||| |  ||| ||||  ||||| |||| ||||||| ||| |||| ||||| | | ||| ||||||| | | ||||    
T  35151850 aaatcaatgtatgtcccaccattttgtggggattcaatttttaaagtgtagacccacaataattcaaactaataagaaagtgaatattaaatagagtgtt 35151751  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  35151750 caaaagagagtgttgctagc 35151731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 7493432 - 7493375
Alignment:
Q  198 gttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| ||| |||||||||    
T  7493432 gttctattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtatta 7493375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 26637662 - 26637586
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||| ||||||||||| |||||||||||| ||||| |||  |||| | ||||| |||||| ||||||| ||||||||    
T  26637662 aaattaatgtatgttcaaccattttgtgtaagttcgattctcaaaatgtagattcacaataatttaaatcaataaaa 26637586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 11364692 - 11364735
Alignment:
Q  18 catcattcctctattaatgcacaatctaagcttccttaatttta 61  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||    
T  11364692 catcatttctctatttatgcacaatccaagcttccttaatttta 11364735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 4674987 - 4675081
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgtt 283  Q
    ||||||||||||  |||| |||||| |||   ||||||||||||||||||||||| | ||| ||||| | | | ||||||||| ||| |||||||    
T  4674987 tttgtgtgagtttaattttcaaagtgtagtcacacaatgatttaaaccaataaaaaaatgaatattagaaagagtgttcaaaatagagtgttgtt 4675081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 271
Target Start/End: Original strand, 34952504 - 34952606
Alignment:
Q  169 atcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttca 268  Q
    |||||||||||| ||||||||||||| || ||| |||| |||  | |||| || |||||||||||||||| | || | | ||||||| ||| | ||||||    
T  34952504 atcaatgtatgtcccaccattttgtgggatttcaattttcaatatgtagacccgcaatgatttaaaccaagagaaaaataagtattagagagagtgttca 34952603  T
Q  269 aaa 271  Q
    |||    
T  34952604 aaa 34952606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 9193463 - 9193560
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    ||||||| ||||| |||| |||||| |||| | ||||| ||| |||||||||||| | || ||||||| |||  ||| ||||||||| ||||| ||||    
T  9193463 tttgtgtaagttcaattttcaaagtgtagacctacaataattaaaaccaataaaaaaatgtgtattaatgatcgtgtacaaaagagagtgttgctagc 9193560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 36629740 - 36629792
Alignment:
Q  191 tgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||||| ||||||||||||| || |||| || ||||||| |||||||||||||    
T  36629740 tgtgtgggttctatttccaatgtgtagacccgcaatgatctaaaccaataaaa 36629792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 32599063 - 32598955
Alignment:
Q  173 atgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaag 272  Q
    |||||||| || ||| |||||||| || ||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||| |||||    
T  32599063 atgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtgagtattaaagagaatgtttaaaag 32598964  T
Q  273 agattgttg 281  Q
    ||| |||||    
T  32598963 agaatgttg 32598955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 32112838 - 32112725
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||| ||||  |||||||||||||| ||| ||||| |||||| |||||||||||||||||||| |||||| ||| ||| ||||| ||| ||||||    
T  32112838 aaatcaatgcatgtcacaccattttgtgtgggttttattttcaaagtgtagatccacaatgatttaaaacaataagagagtgaatattagagagaatgtt 32112739  T
Q  267 caaaagagattgtt 280  Q
    ||||||||| ||||    
T  32112738 caaaagagagtgtt 32112725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 21987351 - 21987458
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||| | |||||| ||| || |||||||||||||||||| ||||||| ||||||||||||||||||| | | ||||||||| ||| | ||||    
T  21987351 aaatcaatgtatatcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgtt 21987450  T
Q  267 caaaagag 274  Q
    ||||||||    
T  21987451 caaaagag 21987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 34905395 - 34905514
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||||| || |||| |||| |||||| |||| |||||||||||||||||||||| ||| ||||||||| |||   ||||    
T  34905395 aaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgtt 34905494  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  34905495 caaaagagagtgttgctagc 34905514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 31116245 - 31116157
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| |||| | |||||||| ||||||||||||| || || | |||||||||||||||||||||| ||| |||||||||    
T  31116245 aaatcaatgtatgtcccactactttgtgtgtgttctatttccaatgtgtaaacccacaatgatttaaaccaataagagagtgagtatta 31116157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 5106349 - 5106476
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||||| |||||| |||||||| | || |||| |||||| || | |||||| ||||||||||||||| ||| ||| ||||| ||    
T  5106349 attggataaaatcaatgtatgtcccaccactttgtgtgggatcaattttcaaagtgtacacccacaaggatttaaaccaataatagagtgaatattagag 5106448  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    |   ||||||||||||  ||||||||||    
T  5106449 agtgtgttcaaaagagggtgttgttagc 5106476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 10133272 - 10133165
Alignment:
Q  174 tgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaaga 273  Q
    ||||||| |||||| ||| || | |||| |||| |||||| |||| |||||||||||||||||||||||||| ||||||||||||  | | |||||||||    
T  10133272 tgtatgtcccaccactttatgggggttcaattttcaaagtgtagaaccacaatgatttaaaccaataaaagagtgagtattaaagtgagtattcaaaaga 10133173  T
Q  274 gattgttg 281  Q
    || |||||    
T  10133172 gagtgttg 10133165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 445877 - 445965
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||||||||  ||||| |||||||| |||| |||| |||||| ||||  ||||||||||||||||||||| ||| |||||||||    
T  445877 aaatcaatgtatgtcacaccactttgtgtgggttcaattttcaaagtctagagtcacaatgatttaaaccaataagagaatgagtatta 445965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 17144800 - 17144700
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    ||||||| |||||||| ||||||||||| ||||||||  |||  |||| |||||| |||| |||||||||||||||| |||||| || | ||||||||||    
T  17144800 attgaatgaaatcaatatatgttccaccgttttgtgtaggttaaattttcaaagtgtagacccacaatgatttaaactaataaaggagtaagtattaaag 17144701  T
Q  259 a 259  Q
    |    
T  17144700 a 17144700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 32122854 - 32122930
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||||||| ||||| ||||||||||||| |||||| |||| |||||| |||| |||||||||||||| |||||||||    
T  32122854 aaatcaatatatgtcccaccattttgtgggagttcaattttcaaagtgtagacccacaatgatttaagccaataaaa 32122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 16852094 - 16851975
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| ||||||||| |||||| |||||  | |||| |||| |||||| |||| |||||||||||||||||||||| ||| || ||||||  ||  |||||    
T  16852094 aaataaatgtatgtcccaccactttgtaggggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgggtattagggaggatgtt 16851995  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  16851994 caaaagagagtgttgctagc 16851975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 16436124 - 16436237
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||  ||||||||||||||| |||||||||| ||||| |||| ||| || |||||||||||||||  || ||| ||||||| | | ||||    
T  16436124 aaatcaatgtatgc-ccaccattttgtgtgggttctatttctaaagtgtagacccaaaaagatttaaaccaataatcgactgaatattaaaaagagtgtt 16436222  T
Q  267 caaaagagattgttg 281  Q
     |||||||| |||||    
T  16436223 taaaagagagtgttg 16436237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 12780879 - 12780773
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    |||||||||||||  ||| | |||||||  |||| |||| |||||| |||||||||||||||||||||||||||  || ||| ||||| |||   |||||    
T  12780879 aatcaatgtatgtctcactactttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataagggaatgaatattagagagggtgttc 12780780  T
Q  268 aaaagag 274  Q
    |||||||    
T  12780779 aaaagag 12780773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 19090336 - 19090210
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| ||| ||| ||| ||| || ||||||||||||| |||||  || ||| | ||     
T  19090336 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgaattcaaccaataaaagagtgagtgctagagagagtgc 19090237  T
Q  266 tcaaaagagattgttgttagctttcct 292  Q
    |||||||||| ||||| |||| |||||    
T  19090236 tcaaaagagagtgttgctagcattcct 19090210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 12753889 - 12753767
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| |||||||  ||| |||| |||||| |||||||| ||||||||| ||  || || |  ||||||||||||||| |||||||||  |||||||| ||    
T  12753889 attggataaaatacatgcatgtcccaccactttgtgtgggttctattttcagggtgtacactcacaatgatttaaactaataaaagagcgagtattagag 12753790  T
Q  259 ataatgttcaaaagagattgttg 281  Q
    | | |||| |||||||| |||||    
T  12753789 agagtgttgaaaagagagtgttg 12753767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 16187538 - 16187465
Alignment:
Q  182 ccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| ||||| |||| |||||| |||| | ||||| ||||||||||||||  || |||||||||    
T  16187538 ccaccattttgtgtaagttcaattttcaaagtgtagacctacaattatttaaaccaataagcgagtgagtatta 16187465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 16187756 - 16187683
Alignment:
Q  182 ccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| ||||| |||| |||||| |||| | ||||| ||||||||||||||  || |||||||||    
T  16187756 ccaccattttgtgtaagttcaattttcaaagtgtagacctacaattatttaaaccaataagcgagtgagtatta 16187683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 2675946 - 2676042
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||| || ||||||||||| |||||| ||||| |  |||  |||| |||| | |||| |||||||| ||||||||||||||| | |||||||||    
T  2675946 attgaatgaattcaatgtatgtcccaccactttgtttaggtttaattttcaaaatgtagacccacaatggtttaaaccaataaaaaagtgagtatta 2676042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 12327334 - 12327278
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtat 215  Q
    |||| ||| ||||||||||||| | ||||||||||||| ||||||||||||| ||||    
T  12327334 attggatagaatcaatgtatgtcctaccattttgtgtgggttctatttccaatgtat 12327278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 1392739 - 1392805
Alignment:
Q  220 ccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||||||||||||||||||||| ||| ||||||||| | |   ||||||||||||| ||||| ||||    
T  1392739 ccacaatgatttaaaccaataagagagtgagtattagatagggtgttcaaaagagagtgttgctagc 1392805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 8441948 - 8441866
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaa 271  Q
    |||||| |||||| |||| |||||| |||| |  |||| || ||||||||||||||| ||||||||| ||| | |||||||||    
T  8441948 tttgtgggagttcaattttcaaagtgtagaccttcaataatctaaaccaataaaagagtgagtattagagagagtgttcaaaa 8441866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 8450752 - 8450670
Alignment:
Q  189 tttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaa 271  Q
    |||||| |||||| |||| |||||| |||| |  |||| || ||||||||||||||| ||||||||| ||| | |||||||||    
T  8450752 tttgtgggagttcaattttcaaagtgtagaccttcaataatctaaaccaataaaagagtgagtattagagagagtgttcaaaa 8450670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 12785059 - 12784986
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||   || | ||| ||| ||||| |||| |||||| |||||||| ||||||||||||||||||    
T  12785059 aatcaatgtatgtcttactactttatgttagttcaattttcaaagtgtagatccataatgatttaaaccaataa 12784986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 19737520 - 19737431
Alignment:
Q  203 atttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagctttcc 291  Q
    ||||||||||| ||| ||| ||| |||||| | ||||||||||| |||||  || ||| ||||||||||||||| ||||| |||| ||||    
T  19737520 atttccaaagtgtaggtcctacattgatttgagccaataaaagagtgagtgatagagagaatgttcaaaagagagtgttgctagcattcc 19737431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 35128846 - 35128728
Alignment:
Q  165 taaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataat 263  Q
    |||||||||||||||| |||||| ||| |||| |||| |||| |||||| ||| ||| ||| |||||| | ||||||||| | ||||| ||| |||        
T  35128846 taaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaaaaaatgagtgttagaga---- 35128751  T
Q  264 gttcaaaagagattgttgttagc 286  Q
    | |||||||||| ||||||||||    
T  35128750 gctcaaaagagagtgttgttagc 35128728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 34384812 - 34384704
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||| ||||||  |||||||||||| ||| |||||||| ||||||||||||| | ||||    
T  34384812 aaatcaatgtatgtcccactattttgtgtgagttcaattttcaaattatagactcacaatgatttagaccgataaaagagtgagtattaaagagagtgtt 34384713  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  34384712 caaaagaga 34384704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 28223905 - 28223779
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    ||||||| |||| | |||||||||  | |||||||||| | || |||| ||||||||||| ||| |||||||||||||||||||||| ||||||||| ||    
T  28223905 attgaatgaaattattgtatgttcaccaattttgtgtgggctcaattttcaaagtatagacccataatgatttaaaccaataaaagagtgagtattagag 28223806  T
Q  259 ataatgttcaaaagagattgttgttag 285  Q
    |  |||||||||||||  |||||||||    
T  28223805 aggatgttcaaaagagggtgttgttag 28223779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 30325995 - 30325887
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||||||||||  ||||| ||| || ||||||||| |||||||| ||||||| ||||||||||||||||||| | | ||||||||| ||| | ||||    
T  30325995 aaatcaatgtatgtctcaccactttatgcgagttctatctccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgtt 30325896  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  30325895 caaaagaga 30325887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 28490843 - 28490729
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||| |||||| |||||| ||||||| ||||| ||||  ||||| |||| ||||||| |||||||||||||| ||| ||||||||| ||| | ||||    
T  28490843 aaatcaaagtatgtcccaccactttgtgtaagttcaattttgaaagtgtagacccacaataatttaaaccaataagagagtgagtattagagagagtgtt 28490744  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  28490743 caaaagagagtgttg 28490729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 5413858 - 5413770
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| |||||| |||||||| |||| |||| |||||| |||| ||| |||||||||||||||||||| | |||||||||    
T  5413858 aaatcaatgtatgtcccaccactttgtgtgggttcaatttacaaagtgtagacccataatgatttaaaccaataaaaaagtgagtatta 5413770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 25919270 - 25919386
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||| |||||  |||||||||||||| | || |||| |||||| ||||  ||||||||||||||||||||||| | ||| ||||||||| | | ||    
T  25919270 aaatcaatatatgtctcaccattttgtgtgggatcaattttcaaagtgtagactcacaatgatttaaaccaataaaaaaatgaatattaaagaaagtatt 25919369  T
Q  267 caaaagagattgttgtt 283  Q
    ||||||||| |||||||    
T  25919370 caaaagagaatgttgtt 25919386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 28090350 - 28090262
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||  |||| |||||| ||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  28090350 aaatcaattcatgtcccaccactttgtgtgagttcaattttcaaagtttagatcaacaatgatttaaaccaataaaagagtgaatatta 28090262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 34368411 - 34368493
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||| |||||| ||||||||||||||||| |||||||| ||||  ||| |||||| |||| ||||||||||||||||||||||    
T  34368411 attggataaaaccaatgtatgttccaccactttgtgtgggttcatttttcaaagtgtagacccacaatgatttaaaccaataa 34368493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 1923668 - 1923556
Alignment:
Q  172 aatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaa 271  Q
    |||||||||  ||||| ||||||||||||| ||||  ||||| ||| |  |||||||||||||||||||| | | ||||||||| |||| ||||||||||    
T  1923668 aatgtatgtcacaccactttgtgtgagttcaatttttaaagtgtagttttacaatgatttaaaccaataagataatgagtattagagatgatgttcaaaa 1923569  T
Q  272 gagattgttgtta 284  Q
     ||| ||||||||    
T  1923568 aagagtgttgtta 1923556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 10950137 - 10950233
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||| |||||||||||||| |||||||||||| ||  |||||||| |||||||||||  || |||||||||||| ||||| ||| ||| |||||    
T  10950137 attgaatgaaatcaatgtatgtcccaccattttgtatggattctattttcaaagtatagactcataatgatttaaactaataagagaatgaatatta 10950233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 25710593 - 25710501
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaaga 259  Q
    |||||||||||||| | |||| || || |||||||||||| |||||| |||| ||||||| |||||||||||||| ||| ||| |||||||||    
T  25710593 aaatcaatgtatgtcctaccacttcgtatgagttctattttcaaagtgtagacccacaataatttaaaccaataagagaatgaatattaaaga 25710501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 37455405 - 37455495
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||||||||||||||||||||||||| | |||| |||| |||||| ||||  |||||| | |||||||||||| ||| |||||||||    
T  37455405 ataaaatcaatgtatgttccaccattttgtgggggttcaattttcaaagtgtagactcacaat-aattaaaccaataagagagtgagtatta 37455495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 39246659 - 39246750
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgag 250  Q
    |||| ||||||||||||||||| |||||| |||||||||||||  ||| |||||| |||| |||||||  ||||||||||||| ||| ||||    
T  39246659 attggataaaatcaatgtatgtcccaccactttgtgtgagttcagttttcaaagtgtagacccacaatactttaaaccaataagagagtgag 39246750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 27592573 - 27592499
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||||||||||||  ||||| ||| || |||||||||||||||||| ||||||  |||||||||||||||||||    
T  27592573 aaatcaatgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaaccaataa 27592499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 43405444 - 43405526
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||||| ||||||||||||||  ||||| ||||| |  |||||||||||||||| |||| ||||||||||||||| ||||||    
T  43405444 attgaatgaaatcaatgtatgtctcaccactttgtatatgttctatttccaaagtgtagacccacaatgatttaaatcaataa 43405526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 17434961 - 17434892
Alignment:
Q  176 tatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    ||||||| || ||||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||    
T  17434961 tatgttctactattttgtatgagttctatttctaaagtgtagacccacattgatttaaaccaataaaaga 17434892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 4714827 - 4714927
Alignment:
Q  186 cattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttag 285  Q
    ||||||||||| ||||||||| |||| | ||||| |||||||||||| ||||||||||||     ||||| ||| ||||||||||||||| ||||| |||    
T  4714827 cattttgtgtgggttctattttcaaaatgtagatacacaatgatttataccaataaaagagaacatattagagagaatgttcaaaagagagtgttgctag 4714926  T
Q  286 c 286  Q
    |    
T  4714927 c 4714927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 36338011 - 36337935
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaa 243  Q
    |||| ||||||||| |||  |||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||    
T  36338011 aaattaatgtatgtcccataattttgtgtatgttcaatttccaaagtgtagacccacaatgatttaaaccaataaaa 36337935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 10142105 - 10142013
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagt 251  Q
    |||| ||||||||||||||||| |||||| |||||||  |||| |||| |||||| |||| | ||||| ||||||| |||||| ||| |||||    
T  10142105 attggataaaatcaatgtatgtcccaccactttgtgttggttccattttcaaagtgtagaccaacaattatttaaatcaataagagagtgagt 10142013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 41330514 - 41330407
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| ||||||||| ||| || |||||||  |||| |||| |||||| ||||  ||||||||||||||||||||| | ||  |||||||||||   ||||    
T  41330514 aaattaatgtatgtcccatcactttgtgtaggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaatgtagtattaaagagtgtgtt 41330415  T
Q  267 caaaagag 274  Q
    ||||||||    
T  41330414 caaaagag 41330407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 17537223 - 17537149
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    |||||||||||||| |||||| ||| |||  |||  |||| |||||| |||||||| ||||||||||||||||||    
T  17537223 aaatcaatgtatgtcccaccaatttttgttggtttaattttcaaagtgtagatccataatgatttaaaccaataa 17537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 28434945 - 28434851
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||| ||||||||||| ||||| |||||| |  ||||  |||| |||| |||||| |||| |||||||||||||||||||||| | | |||||||||    
T  28434945 attggataaaatcaatatatgtcccaccact--gtgttggttcaattttcaaagtttagacccacaatgatttaaaccaataagaaaatgagtatta 28434851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 42224712 - 42224627
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagt 251  Q
    |||||||||||||| |||||| ||| |||| |||| ||||||||||| ||| ||| ||| |||||| | ||||||||||| |||||    
T  42224712 aaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaagagtgagt 42224627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 43541902 - 43541958
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtat 215  Q
    ||||||||||||||||||||||  || || ||||||||||||| |||| ||||||||    
T  43541902 attgaataaaatcaatgtatgtctcatcactttgtgtgagttcaattttcaaagtat 43541958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 2935449 - 2935496
Alignment:
Q  228 atttaaaccaataaaagattgagtattaaagataatgttcaaaagaga 275  Q
    |||||||||||||||||| ||||||||| ||| | |||||||||||||    
T  2935449 atttaaaccaataaaagagtgagtattagagaaattgttcaaaagaga 2935496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 31885948 - 31885877
Alignment:
Q  171 caatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaa 242  Q
    ||||| |||| |||||||||| ||   |||| |||| |||||| |||||| |||||||||||||||||||||    
T  31885948 caatggatgtcccaccattttctggaggttcaattttcaaagtgtagatctacaatgatttaaaccaataaa 31885877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 41105691 - 41105577
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||| | |||| |||| | |||||||| |||| |||| ||||||  | | ||||| |||||||||||||||| |||  |||||||| ||| | || |    
T  41105691 aaatcaagggatgtcccactactttgtgtgggttcaattttcaaagtgcatacccacagtgatttaaaccaataagagagcgagtattagagagagtgct 41105592  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  41105591 caaaagagagtgttg 41105577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 25630862 - 25630938
Alignment:
Q  163 aataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaat 239  Q
    |||||||| ||||||| | |||| ||||||| |  |||| |||| |||||| |||| |||| |||||||||||||||    
T  25630862 aataaaattaatgtatatcccactattttgtataggttcaattttcaaagtgtagacccacgatgatttaaaccaat 25630938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 28611892 - 28611780
Alignment:
Q  174 tgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaaga 273  Q
    ||||||| ||| || ||||| ||||||| ||||  ||||| ||||  |||||||||||||| |||||||||| |  || ||| ||| | || ||||||||    
T  28611892 tgtatgtcccatcactttgtatgagttccatttttaaagtgtagacgcacaatgatttaaatcaataaaagagttggtgttagagagagtgctcaaaaga 28611793  T
Q  274 gattgttgttagc 286  Q
    || ||||| ||||    
T  28611792 gagtgttgctagc 28611780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 40971574 - 40971454
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatc-cacaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| ||| ||||  ||||||||||| ||| ||  ||| |||||| | ||||||||| | ||||| ||| | | | |||    
T  40971574 aaatcaatgtatgtcccaccactttatgtaagtttcatttccaaagtgtaggtcttacattgattttacccaataaaatagtgagtgttagatagagtgt 40971475  T
Q  266 tcaaaagagattgttgttagc 286  Q
    |||||||||| ||||| ||||    
T  40971474 tcaaaagagagtgttgctagc 40971454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 18427271 - 18427183
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||| ||| |||||||||    
T  18427271 aaatcaatgtatgtcccaccattttgtgtgggttctattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtatta 18427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 20791355 - 20791463
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| ||| || |||||||||||||||||| ||||||| ||||||||||||||||||| | | ||||||||| ||| | ||||    
T  20791355 aaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgtt 20791454  T
Q  267 caaaagaga 275  Q
    |||||||||    
T  20791455 caaaagaga 20791463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 41452016 - 41451897
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||| |||||| |||||| |||||||| |||| |||| |||||  |||| |||||||||||||||||||||| ||| ||||||||| ||| | ||||    
T  41452016 aaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 41451917  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  41451916 caaaagagagtgttgctagc 41451897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 46450125 - 46450213
Alignment:
Q  168 aatcaatgtatgttccacca-ttttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||||||| |||||| ||||||||| ||||||||| |||||| |||| |||||||||||||||||||||| ||| |||||||||    
T  46450125 aatcaatgtatgtcccaccacttttgtgtgggttctatttgcaaagtgtagacccacaatgatttaaaccaataagagagtgagtatta 46450213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 14236078 - 14236197
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||| ||||| |||||| ||| || |||||||||||||||||| |||||||||||| ||||| |||||||||| | ||||||||| | | | ||||    
T  14236078 aaatcaatatatgtcccaccactttatgcgagttctatttccaaagtgtagatccacaataatttagaccaataaaaaagtgagtattagaaagagtgtt 14236177  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||| ||| ||||| ||||    
T  14236178 caaaacagagtgttgctagc 14236197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 24734764 - 24734883
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    ||||||| |||||| |||||| |||||||| |||| |||| |||||  |||  |||||||||||||||||||||| ||| ||||||||| ||| | ||||    
T  24734764 aaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtaggcccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 24734863  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  24734864 caaaagagagtgttgctagc 24734883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 52124077 - 52123958
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||| ||||||||| |||| |||||||| | |||| |||| |||||| |||| |||||||||||||||||||||| | | ||||||||| ||| | ||||    
T  52124077 aaattaatgtatgtcccactattttgtgggggttcaattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgtt 52123978  T
Q  267 caaaagagattgttgttagc 286  Q
    ||||||||| ||||| ||||    
T  52123977 caaaagagagtgttgctagc 52123958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 284
Target Start/End: Original strand, 28529312 - 28529427
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| |||||| |  ||||| |||| |||| |||||| |||| |||||||||||||||||||||| ||| ||||||||| |||   ||||    
T  28529312 aaatcaatgtatgtcccaccact--gtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgtt 28529409  T
Q  267 caaaagagattgttgtta 284  Q
    ||||||||| ||||||||    
T  28529410 caaaagagagtgttgtta 28529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 38414703 - 38414813
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataat 263  Q
    |||| |||||||||||| ||||||||||||||| |||  ||||  ||||| ||||||||| || |||||||||||||| ||| ||||| ||||||| |||    
T  38414703 ataagatcaatgtatgtcccaccattttgtgtgggtttaatttttaaagtgtagatccacgataatttaaaccaataagagagtgagtgttaaagagaat 38414802  T
Q  264 gttcaaaagag 274  Q
    | |||||||||    
T  38414803 gctcaaaagag 38414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 2419584 - 2419481
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    |||||||| |||| | |||| ||||  |||||||||||||||| || |||| |||||||||||||||||||||| | | ||||||||||||| | |||||    
T  2419584 aatcaatgcatgtcctaccactttgcatgagttctatttccaatgtgtagacccacaatgatttaaaccaataagaaagtgagtattaaagaaagtgttc 2419485  T
Q  268 aaaa 271  Q
    ||||    
T  2419484 aaaa 2419481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 10948676 - 10948589
Alignment:
Q  172 aatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaaga 259  Q
    |||||||||||||||| |||||||  |||| ||||  ||||| || | |||||||||||||||||||||||||| |||||||||||||    
T  10948676 aatgtatgttccaccactttgtgtttgttcaatttttaaagtgtaaacccacaatgatttaaaccaataaaagagtgagtattaaaga 10948589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 38138688 - 38138589
Alignment:
Q  182 ccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttg 281  Q
    ||||||||||||||   |||||| | |||||||||||||||||||||||||||||||||| ||| | ||||||||| | | || |||||||||| |||||    
T  38138688 ccaccattttgtgtagtttctatcttcaaagtatagatccacaatgatttaaaccaataagagagtaagtattaaataaagtgatcaaaagagagtgttg 38138589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 48351487 - 48351614
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||| |||||  ||| | |||||||| |||| |||| |||||| || ||||| ||||||||||| |||||| |||  |||||||| ||    
T  48351487 attggataaaatcaatatatgtctcactactttgtgtgggttcaattttcaaagtgtatatccataatgatttaaatcaataagagaaagagtattagag 48351586  T
Q  259 ataatgttcaaaagagattgttgttagc 286  Q
    | ||||||||||||||| ||| ||||||    
T  48351587 aaaatgttcaaaagagaatgtcgttagc 48351614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 20493566 - 20493452
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||||||||| | |||| |||||| | |||| || | |||||| |||| |||||||||||||||||||||| ||| |||||| || ||| | ||||    
T  20493566 aaatcaatgtatgtcctaccactttgtgggggttcaatattcaaagtgtagacccacaatgatttaaaccaataagagagtgagtaatagagagagtgtt 20493467  T
Q  267 caaaagagattgttg 281  Q
    ||||||||| |||||    
T  20493466 caaaagagagtgttg 20493452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 55452130 - 55452048
Alignment:
Q  173 atgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||| |||||| |||||||| |||||||||||||||| ||||  || |||||||||||||||| ||||| |||||||||    
T  55452130 atgtatgtcccaccactttgtgtgggttctatttccaaagtgtagactcataatgatttaaaccaatgaaagagtgagtatta 55452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 29588862 - 29588746
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    |||| ||||||||||||||||| |   || ||| ||||||||| |||| |||||| |||| ||||||||||||||| |||||| ||| ||||| ||| ||    
T  29588862 attggataaaatcaatgtatgtcctttcactttatgtgagttcaattttcaaagtgtagacccacaatgatttaaatcaataagagagtgagtgttatag 29588763  T
Q  259 ataatgttcaaaagaga 275  Q
    | | |||||||||||||    
T  29588762 agagtgttcaaaagaga 29588746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 46161006 - 46161094
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||||  |||| | |||| |||||||  |||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  46161006 aaatcaatacatgtccgaccactttgtgttggttctatttccaaagtgtagatccataatgatttaaaccaataagagagtgagtatta 46161094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 752461 - 752539
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||| |||||| |||||||| |||||||||| ||||| |||| |||||||||||||||| ||||| ||| |||||||||    
T  752461 atgtcccaccactttgtgtgggttctatttctaaagtgtagacccacaatgatttaaactaataagagaatgagtatta 752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 8825100 - 8824986
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgtt 266  Q
    |||||||| ||||| |||||||||| || | |||| |||| |||||| || |  |||||| |||||||||||||| ||| ||||||||||||| | ||||    
T  8825100 aaatcaatatatgtcccaccattttatgcgggttcaattttcaaagtctacactcacaataatttaaaccaataagagagtgagtattaaagagagtgtt 8825001  T
Q  267 caaaagagattgttg 281  Q
    ||||| ||| |||||    
T  8825000 caaaacagaatgttg 8824986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 50156789 - 50156675
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaag 258  Q
    ||||||| |||| |||||||||||||| | |||| | | |||| ||||  ||||| |||| |||||||||||||||||||||| ||| ||||||||| |     
T  50156789 attgaatgaaattaatgtatgttccacaactttgcgggggttcaattttaaaagtgtagacccacaatgatttaaaccaataagagagtgagtattacaa 50156690  T
Q  259 ataatgttcaaaaga 273  Q
    | | |||||||||||    
T  50156689 agagtgttcaaaaga 50156675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 27243096 - 27243224
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaagattgagtattaaa 257  Q
    |||| |||||||||||| |||| |||||| ||| |||| |||| ||||||||||| || || ||||| |||||||| ||||| | ||| ||||||||| |    
T  27243096 attggataaaatcaatgcatgtcccaccactttatgtgggttccatttccaaagtgtatgacccacattgatttaacccaatgagagagtgagtattaga 27243195  T
Q  258 gataatgttcaaaagagattgttgttagc 286  Q
     | | ||||||||||||| ||||| ||||    
T  27243196 aagagtgttcaaaagagagtgttgctagc 27243224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 37776824 - 37776736
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| | |||| |||||||| |||| |||| |||||| |||| | |||||||||||||||| ||| ||| |||||||||    
T  37776824 aaatcaatgtatgtcctaccactttgtgtgggttcaattttcaaagtgtagacctacaatgatttaaaccactaagagagtgagtatta 37776736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 13809132 - 13809215
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataa 241  Q
    |||| ||||||||||||||||| |||||||||| |||| |||| |||||||||||||| || ||||| || ||||| |||||||    
T  13809132 attggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaagtatatgacccacattgttttaacccaataa 13809215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 29755554 - 29755633
Alignment:
Q  162 gaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||| ||||||| |||||| ||| | |||||||| |||| |||| |||||| |||||| ||||||||||||||||||||    
T  29755554 gaatagaatcaatatatgtttcactactttgtgtgggttcaattttcaaagtgtagatcaacaatgatttaaaccaataa 29755633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 742025 - 742103
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||| |||||| ||||||||  ||||||||| ||||| |||| |||||||||||||||| ||||| ||| |||||||||    
T  742025 atgtcccaccactttgtgtggattctatttctaaagtgtagacccacaatgatttaaactaataagagaatgagtatta 742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 41707568 - 41707490
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaacca 237  Q
    |||| |||||||||||||||||| || || |||||||| |||| ||||  |||||||||| ||||||| ||||||||||    
T  41707568 attggataaaatcaatgtatgtttcatcactttgtgtgggttcaatttttaaagtatagacccacaataatttaaacca 41707490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 7419302 - 7419241
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaa 225  Q
    ||||||| ||| ||||| || | ||||||||||||||||||||||||||| |||||||||||    
T  7419302 ataaaataaatatatgtccctctattttgtgtgagttctatttccaaagtgtagatccacaa 7419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 24749029 - 24748916
Alignment:
Q  169 atcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgttc 267  Q
    |||||||||||| |||||||||| |||| |||| ||||| ||||| ||| ||| ||| |||||| | ||||||||||| ||||| ||| ||| | || ||    
T  24749029 atcaatgtatgtcccaccattttatgtgggttccatttctaaagtgtaggtcctacattgatttcatccaataaaagagtgagtgttagagagagtgctc 24748930  T
Q  268 aaaagagattgttg 281  Q
    |||||||| |||||    
T  24748929 aaaagagagtgttg 24748916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 30355241 - 30355141
Alignment:
Q  177 atgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaat--aaaagattgagtattaaagataatgttcaaaagag 274  Q
    ||||||||||||||| | |||||| ||||| |||| | || || ||||||||||||||| |||  |||||  ||||||||| ||| ||||||||||||||    
T  30355241 atgttccaccattttctatgagttttattttcaaaatgtatattcacaatgatttaaactaataaaaaagtgtgagtattagagagaatgttcaaaagag 30355142  T
Q  275 a 275  Q
    |    
T  30355141 a 30355141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 44844032 - 44844117
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaa 243  Q
    |||||||||||| ||||||||| |||||||||  ||||||||| ||||  ||||| || || |||||||||||||| |||||||||    
T  44844032 attgaataaaataaatgtatgtcccaccatttcatgtgagttcaatttttaaagtgtatgacccacaatgatttaatccaataaaa 44844117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 19345121 - 19345033
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    |||||||||||||| |||||| |||||  | |||| |||| |||| | ||||  ||||||||||||||||||||||||| | |||||||    
T  19345121 aaatcaatgtatgtcccaccactttgttggggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagaataagtatta 19345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 22604611 - 22604687
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaac 235  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||| |||| |||| | ||||  |||||||||||||||    
T  22604611 attggataaaattaatgtatgtcccaccattttgtgggagttcaattttcaaaatgtagactcacaatgatttaaac 22604687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 26310567 - 26310495
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaat 239  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||| |||| ||| ||||||||||||||||    
T  26310567 aaatcaatgtatgtcccaccattttttgttggttcaattttcaaagtgtagacccataatgatttaaaccaat 26310495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 24429125 - 24429058
Alignment:
Q  188 ttttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||||| | |||| ||||  ||||| ||||||||||||||||||||||||||||| | |||||||||    
T  24429125 ttttgtgagggttcaatttttaaagtgtagatccacaatgatttaaaccaataaaatagtgagtatta 24429058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 41607471 - 41607562
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaaga 259  Q
    ||||||| |||||  ||| ||||||||||||||  |||| |||||| |||||||||| | ||||||| |||||||||| | | |||||||||    
T  41607471 aatcaatatatgtctcactattttgtgtgagtttaattttcaaagtgtagatccacagttatttaaatcaataaaagaataattattaaaga 41607562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 39186028 - 39186142
Alignment:
Q  172 aatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaa 271  Q
    |||||||||  ||||| ||| || |||||||||||||||||| ||||||  |||||||||||| |||||| |||  | |||||  ||| | | |||||||    
T  39186028 aatgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaatcaataagagagagggtattggagagagtattcaaaa 39186127  T
Q  272 gagattgttgttagc 286  Q
    |||| ||||| ||||    
T  39186128 gagagtgttgatagc 39186142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 30624682 - 30624734
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaa 211  Q
    |||||||||||| |||||||||| ||||| ||||||||||||| |||| ||||    
T  30624682 attgaataaaattaatgtatgtttcaccactttgtgtgagttcaattttcaaa 30624734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 20586971 - 20586885
Alignment:
Q  168 aatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatt 254  Q
    |||| ||||||||||||||| ||| |||  |||   |||  |||||||| ||| ||||| |||||||||||||||||| ||||||||    
T  20586971 aatcgatgtatgttccaccactttatgtatgtttagtttttaaagtatatatcaacaataatttaaaccaataaaagagtgagtatt 20586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 37600251 - 37600125
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatcc-acaatgatttaaaccaataaaagattgagtattaaagataatgt 265  Q
    |||||||||||||| |||||| ||| |||| |||| ||||| ||||| ||| ||| ||| ||| || ||||||||||||| || ||  || ||| | ||     
T  37600251 aaatcaatgtatgtcccaccactttatgtgggttccatttctaaagtgtaggtcctacattgaattcaaccaataaaagagtgggtgctagagagagtgc 37600152  T
Q  266 tcaaaagagattgttgttagctttcct 292  Q
    |||||||||| ||||| |||| |||||    
T  37600151 tcaaaagagagtgttgctagcattcct 37600125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 43657117 - 43657071
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagt 213  Q
    |||||||||||||| |||||| ||| ||||||||| |||||||||||    
T  43657117 aaatcaatgtatgtcccaccactttatgtgagttccatttccaaagt 43657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 49072080 - 49072138
Alignment:
Q  183 caccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataa 241  Q
    ||||| ||||| |||||| ||||| |||||| |||| ||||||| ||||||||||||||    
T  49072080 caccactttgtatgagttatattttcaaagtgtagacccacaataatttaaaccaataa 49072138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 50661646 - 50661564
Alignment:
Q  164 ataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtata-gatccacaatgatttaaaccaataaaaga 245  Q
    |||||||||||| |||| |||||| ||| |||| |||| ||||||||| | || || ||||| |||||||| |||||||||||    
T  50661646 ataaaatcaatgcatgtcccaccactttatgtgggttccatttccaaaatgtatgacccacattgatttaacccaataaaaga 50661564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 22856319 - 22856238
Alignment:
Q  203 atttccaaagtatagatccacaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||| |||||| |||||||||||| ||||||||||||| |||| | ||| |   ||| ||||||||||| ||| ||||||||||    
T  22856319 attttcaaagtgtagatccacaattatttaaaccaatagaagagttagtgt--cagagaatgttcaaaaaagagtgttgttagc 22856238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 43016496 - 43016560
Alignment:
Q  191 tgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattgagtatta 255  Q
    ||||| ||||| ||||  ||||||||||| || ||||||||||| |||||| ||| |||||||||    
T  43016496 tgtgttagttcaatttttaaagtatagattcataatgatttaaatcaataagagagtgagtatta 43016560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 26983 - 26905
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaaga 245  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||  |||| ||| |||| |||||||||||||||||    
T  26983 aaatcaatgtatgttccaccactttgtgtgggttcaattttcaaagcgtagacccataatgctttaaaccaataaaaga 26905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 43056 - 42931
Alignment:
Q  159 attgaataaaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgattt-aaaccaataaaagattgagtattaaa 257  Q
    |||||||||||||||| ||| | |||||||||||||| ||||| ||||  |||||||| |  || |||||||| |||||||||||||| | | |||||||    
T  43056 attgaataaaatcaatatatctgccaccattttgtgtaagttcaattttaaaagtataaactcaaaatgatttaaaaccaataaaagagttaatattaaa 42957  T
Q  258 gataatgttcaaaagagattgttgtt 283  Q
    || ||  ||||||| ||| |||||||    
T  42956 gagaacattcaaaaaagagtgttgtt 42931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 8475 - 8413
Alignment:
Q  224 aatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    |||||||||||||||||||||| | ||||||||||| | | ||||||||||| ||||||||||    
T  8475 aatgatttaaaccaataaaagaattagtattaaagagagtattcaaaagagagtgttgttagc 8413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 9723 - 9805
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattga 249  Q
    |||||||||||| | ||||||||||||||| |||| ||||  ||||| ||||  |||||| |||||||| ||||| |||||||    
T  9723 aaatcaatgtatatcccaccattttgtgtgggttcaattttaaaagtgtagactcacaataatttaaacgaataagagattga 9805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 11269 - 11351
Alignment:
Q  167 aaatcaatgtatgttccaccattttgtgtgagttctatttccaaagtatagatccacaatgatttaaaccaataaaagattga 249  Q
    |||||||||||| | ||||||||||||||| |||| ||||  ||||| ||||  |||||| |||||||| ||||| |||||||    
T  11269 aaatcaatgtatatcccaccattttgtgtgggttcaattttaaaagtgtagactcacaataatttaaacgaataagagattga 11351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 204774 - 204710
Alignment:
Q  222 acaatgatttaaaccaataaaagattgagtattaaagataatgttcaaaagagattgttgttagc 286  Q
    ||||| || ||||||||||||||| |||||| || ||| ||||||||||| ||| ||||| ||||    
T  204774 acaattatataaaccaataaaagagtgagtactagagagaatgttcaaaaaagagtgttgctagc 204710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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