View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_17 (Length: 276)
Name: NF18917_low_17
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 23459827 - 23459925
Alignment:
| Q |
159 |
aatcaaaccaagtaattaaattaacaaattactttctgttggagaaaagatactatttggaatatgcattggaatgaatgactagcagagagactacaa |
257 |
Q |
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| T |
23459827 |
aatcaaaccaagtaattaaattaaaaaattactttctgttggagaaaagatactatttggaatatgcattggaaataatgagtagcagagagattacaa |
23459925 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 23445380 - 23445419
Alignment:
| Q |
27 |
taagactaagaaggaaaagatgaagggaactagctacaaa |
66 |
Q |
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| T |
23445380 |
taagactaagaaggaaaagatgaagggaacttgctacaaa |
23445419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 23427057 - 23427098
Alignment:
| Q |
27 |
taagactaagaaggaaaagatgaagggaactagctacaaaat |
68 |
Q |
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| T |
23427057 |
taagactaagaaggagaagatgaaaggaactagctacaaaat |
23427098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 23496462 - 23496501
Alignment:
| Q |
27 |
taagactaagaaggaaaagatgaagggaactagctacaaa |
66 |
Q |
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| T |
23496462 |
taagattaagaaggaaaagatgaagggaactggctacaaa |
23496501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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