View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_19 (Length: 247)
Name: NF18917_low_19
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 29302416 - 29302648
Alignment:
| Q |
1 |
taaacatgtagaaataatcatatggattatgttacagtatgcaatgattgcatatgaaatgaaaccacaatacgtgtatatatgagaacttgatagtgaa |
100 |
Q |
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| T |
29302416 |
taaatatgtagaaataatcatatggattatgttacagtatgcaatgattgcatatgaaatgaaaccacaatacgtgtatatatgagaacttgatagtgaa |
29302515 |
T |
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| Q |
101 |
aatttcagattatgtaccttaagaagtacaagtaatgattctataattggttccccaaaagttgatattttgtctaagccacattgctttaccaaggaat |
200 |
Q |
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| T |
29302516 |
aatttcagattatgtaccttaagaagtacaagtaatgattctataattggttccccaaaagttgatattttgtctaagccacattgttttaccaaggaat |
29302615 |
T |
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| Q |
201 |
gaatggcagtaacagcatataactgcagaaaat |
233 |
Q |
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| T |
29302616 |
gaatggcagtaacagcatataactgcagaaaat |
29302648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 29320148 - 29320265
Alignment:
| Q |
114 |
gtaccttaagaagtacaagtaatgattctataattggttccccaaaagttgatattttgtctaagccacattgctttaccaaggaatgaatggcagtaac |
213 |
Q |
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|||||||||||||||| |||| |||| ||| ||| |||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| |||| |
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| T |
29320148 |
gtaccttaagaagtacgagtactgatgctacaatatgttccccaaaaggcgatattttgtctaagccacaattttttaccaaggagtgaatggcgataac |
29320247 |
T |
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| Q |
214 |
agcatataactgcagaaa |
231 |
Q |
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||||| | |||| ||||| |
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| T |
29320248 |
agcatttgactgaagaaa |
29320265 |
T |
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