View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18917_low_2 (Length: 722)
Name: NF18917_low_2
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 27560090 - 27560418
Alignment:
| Q |
9 |
caaaggaaaagaaaaacattgcaatcaaattcatttcagtccgagacatgctctaagacttagaaggtaaaatataagtgacactcaattaaatttaatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560090 |
caaaggaaaagaaaaacattgcaatcaaattcgtttcagtccgagacatgctctaagatttagaaggtaaaatataagtgacactcaattaaatttaatc |
27560189 |
T |
|
| Q |
109 |
tcaaatgaggaaaatgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttttga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560190 |
tcaaatgaggaaaatgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttttga |
27560289 |
T |
|
| Q |
209 |
agactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaa |
308 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560290 |
agactttatttccaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaa |
27560389 |
T |
|
| Q |
309 |
aaagtatgtatagtattaattcaaggaca |
337 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
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| T |
27560390 |
aaagtatgtatggtattaattcaaggaca |
27560418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 376 - 708
Target Start/End: Original strand, 27560416 - 27560751
Alignment:
| Q |
376 |
acatgatatttgaagtcattcaattcaaagaggtctaaatcaacaaaaggtattcaagtttagtaggtaactcttcaaatttaattcaagccttacaaaa |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560416 |
acatgatatttgaagtcattcaattcaaagaggtgtaaatcaacaaaaggtattcaagtttagtaggtaactcttcaaatttaattcaagccttacaaaa |
27560515 |
T |
|
| Q |
476 |
ccggcttgtaaggtgataagtgatgactgcccaccaattataaatatgttttcagaccctatctcatccaacgttagactctcaaacacacccgggactg |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560516 |
ccggcttgtaaggtgataagtgatgactgcccaccaattataaatatgttttcagaccctatctcatccaacgttagactctcaaacacacccgggactg |
27560615 |
T |
|
| Q |
576 |
gacatct---gtagtgcgactagagtgacccaatagtggggggccaacaaatcatggataggctctgataccatcttagaattcgggatgagcctaactt |
672 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27560616 |
gacatctgtagtagtgcgactagagtgacccaatagtggggggccaacaaatcttggataggctctgataccatcttagaattcgggtcgagcctaactt |
27560715 |
T |
|
| Q |
673 |
tacccttacaaaaccagtttgcgtcccccaatagct |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
27560716 |
tacccttacaaaaccagtttgcgtcccccaatagct |
27560751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 191 - 582
Target Start/End: Original strand, 36667764 - 36668144
Alignment:
| Q |
191 |
acttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
290 |
Q |
| |
|
|||||||| ||||||||| |||||||||| | || |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36667764 |
acttaccattgcttttgacgactttatttccgaatcctgctcagcacatttgtttgcaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
36667863 |
T |
|
| Q |
291 |
ataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacccgcctacaccctcttgcggtataatccagccaacatgatatttgaag |
390 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||| |||||| | ||||| || |||||||||||||||||| || | ||||| |
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|
| T |
36667864 |
ataaaccttaatgcttaaa---------tagtattaactcaaggacaagaactcgcctataacctctggcagtataatccagccaacataatttgtgaag |
36667954 |
T |
|
| Q |
391 |
tcattcaattcaaagaggtctaaatcaacaaaaggtattcaagtttagtaggtaactcttcaaatttaattcaagccttacaaaaccggcttgtaaggtg |
490 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||| |||||| |||||||||||||||| ||||| |||| |||| ||||||||||||||| ||||||||| |
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|
| T |
36667955 |
tcattaaattcaaagaggtgtaaatcgacaaacagtattccagtttagtaggtaact--tcaaaattaactcaacccttacaaaaccggcctgtaaggtg |
36668052 |
T |
|
| Q |
491 |
ataagtgatgactgcccaccaattataaatatgttttcagaccctatctcatccaacgttagactctcaaacacacccgggactggacatct |
582 |
Q |
| |
|
|| |||||||||| |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| | ||| ||||||||| |
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|
| T |
36668053 |
atgagtgatgacttcccaacaattataaatatgttttcagaccaaatcgcatcaaacgttagactctcaaacacacacaggattggacatct |
36668144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 36667651 - 36667728
Alignment:
| Q |
9 |
caaaggaaaagaaaaacattgcaatcaaat-tcatttcagtccgagacatgctctaagacttagaaggtaaaatataag |
86 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||| |||| |||||||||||||| | ||||||||||||||||||| |
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|
| T |
36667651 |
caaaggaaaagaaaaacaatgcaatcaaatctgattt-agtcagagacatgctctaaaatttagaaggtaaaatataag |
36667728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 4e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 182 - 530
Target Start/End: Original strand, 29409684 - 29410043
Alignment:
| Q |
182 |
ccaaggtagacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaaca |
281 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
29409684 |
ccaaagtagactcaccaatgcttttgaagacttcatttccaaaacctgttcagcacatttgtttgcaaagctcttgagttcgcttgtctgcttcaaaaca |
29409783 |
T |
|
| Q |
282 |
aaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacccgcctacaccctcttgcggtataatccagccaacatga |
381 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| || ||||||||||| |||||||||| | ||||||| ||||| |||| |||||| || |
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|
| T |
29409784 |
aaggacataacgaaccttaatgcttaaaaagtatgtatggtactagttcaaggacaagaacccgcctataaactcttgcagtatattccaaccaacacga |
29409883 |
T |
|
| Q |
382 |
tatttgaagtcattcaattcaaagaggtctaaatcaacaaaaggtattcaagtttagtaggtaactcttcaaatt-----------taattcaagcctta |
470 |
Q |
| |
|
| | |||||||||| ||||||||||||| || |||| ||||| ||||| ||||||| | |||||||| |||| ||| |||| ||||| |
|
|
| T |
29409884 |
tttgtgaagtcattaaattcaaagaggtgtatgtcaataaaagatattccagtttagcaattaactcttagaatttagggtgggcctaactcaaccctta |
29409983 |
T |
|
| Q |
471 |
caaaaccggcttgtaaggtgataagtgatgactgcccaccaattataaatatgttttcag |
530 |
Q |
| |
|
|||||||||||||| | || | ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
29409984 |
caaaaccggcttgtgaagtcctgagtgatgactgcccaccgattataaatatgttttcag |
29410043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 29409491 - 29409614
Alignment:
| Q |
9 |
caaaggaaaagaaaaacattgcaatcaaat------tcatttcagtccgagacatgctctaagacttagaaggta---aaatataagtgacactcaatta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||| |||| ||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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|
| T |
29409491 |
caaaggaaaagaaaaacattgcaatcaattcaaatctgattt-agtcacagacatgctctaagatttagaaggtactaaaatacaagtgacactcaatta |
29409589 |
T |
|
| Q |
100 |
aatttaatctcaaatgaggaaaatg |
124 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29409590 |
aatttaatctcaaatgaggaaaatg |
29409614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 671
Target Start/End: Original strand, 20738713 - 20738747
Alignment:
| Q |
637 |
ctgataccatcttagaattcgggatgagcctaact |
671 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
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|
| T |
20738713 |
ctgataccatcttagaatttgggatgagcctaact |
20738747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 165 - 343
Target Start/End: Complemental strand, 24203628 - 24203449
Alignment:
| Q |
165 |
acagataaagaaaaacaccaaggta-gacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcg |
263 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||| |||||| |
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|
| T |
24203628 |
acagataaagaaaaacacaaaggtaagacttaccaatgtttttgaagtcttcattcccaaaacctgttcagcacatttatttgcaaggctcttcagttcg |
24203529 |
T |
|
| Q |
264 |
cttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacc |
343 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
24203528 |
cttgtccgcttcaaaacaaaggaaccaataaaccttaatgcttaaaaagtatgtatggtataaattcaaggacaagaacc |
24203449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 30870622 - 30870681
Alignment:
| Q |
256 |
tgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgt |
317 |
Q |
| |
|
|||||| | |||||||||||||||| |||| ||||||||| |||||||| |||||||||||| |
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|
| T |
30870622 |
tgagtttgattgtctgcttcaaaac-aagggatcaataaatcttaatgc-taaaaagtatgt |
30870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 671
Target Start/End: Original strand, 49190159 - 49190203
Alignment:
| Q |
627 |
tggataggctctgataccatcttagaattcgggatgagcctaact |
671 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
49190159 |
tggataggctctgataccatcttagaatttgggttgagccaaact |
49190203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Complemental strand, 19385657 - 19385601
Alignment:
| Q |
614 |
ggccaacaaatcatggataggctctgataccatcttagaattcgggatgagcctaact |
671 |
Q |
| |
|
|||||| | ||| |||||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
19385657 |
ggccaatagatcttggataggctttgataccatcttagaatttggg-tgagcctaact |
19385601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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