View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18917_low_23 (Length: 231)
Name: NF18917_low_23
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_23 |
 | |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 9320576 - 9320369
Alignment:
| Q |
9 |
gtgtgtatgctgggtttcaaaagaaacaaaaaatggacagcaatgtatgctatgcatgaaagaaagaatttgctaagtgtgaattttggtgtgaattgac |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
9320576 |
gtgtgtatgctggatttcaaaagaaacaaaaaatggacagcaatgtatgctatgcatgaaagaaagaatttgctaagtgtgaaatttggtatgaattgac |
9320477 |
T |
|
| Q |
109 |
agcaatgtatgctatgtgatagcaaattcttgtctttgcatcatgtcattttatgtacttgcctcaccctaatggaaaaatgactttcattattgttctt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9320476 |
agcaatgtatgctatgtgatagcaaattcttctctttgcatcatgtcattttatgtacttgcctcaccctaatggaaaaatgactttcattattgttctt |
9320377 |
T |
|
| Q |
209 |
tcttttgc |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
9320376 |
tcttttgc |
9320369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 9328157 - 9327961
Alignment:
| Q |
27 |
aaaagaaacaaaaaatggacagcaatgtatgctatgcatgaaagaaagaatttgctaagtgtgaattttggtgtgaattgacagcaatgtatgctatgtg |
126 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
9328157 |
aaaagaaacaaaaaattgacaacaatgtaagctatgcatgaaagtaagaatttgctaagtgtggattctggtatgaattgacagcaatgtatgctatgtg |
9328058 |
T |
|
| Q |
127 |
atagcaaattcttgtctttgcatcatgtcattttatgtacttgcctcaccctaatggaaaaatgactttcattattgttctttcttttgctaagtgt |
223 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
9328057 |
atagaaaattattctctttgcatcatgtcattttatgtacttgcctcaccctaatgaaaaaatcactttcattattgttctttcttttgataagtgt |
9327961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 9061705 - 9061758
Alignment:
| Q |
9 |
gtgtgtatgctgggtttcaaaagaaacaaaaaatggacagcaatgtatgctatg |
62 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | | || ||||||||||| |
|
|
| T |
9061705 |
gtgtgtatgctggatttcaaaagaaacaaaaaattaataacattgtatgctatg |
9061758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 3991 - 3771
Alignment:
| Q |
9 |
gtgtgtatgctgggtttcaaaagaaacaaaaaatggacagcaatgtatgctatgcatgaaagaaagaatttgctaagtgtgaattttggtgtgaattgac |
108 |
Q |
| |
|
|||||| || ||| ||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3991 |
gtgtgtttggtggatttcaaaagaaactaaaaattgacaatgatgtatgctatgtgtgaaagaaagaatttgctaagtgtgaattttggtatgaattgac |
3892 |
T |
|
| Q |
109 |
agcaatgtatgctatgtgatagcaaattcttgtctttgcatcatgtcattttatgtacttgcctcaccctaatggaaaaatgactttcattattgttctt |
208 |
Q |
| |
|
| |||||||||| |||||| ||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||| ||||||||| || |
|
|
| T |
3891 |
aacaatgtatgcaatgtgacagcaaattcttctctttgcatcatgtcatttcatgaacttgcctcatcctaatggcaaaatgacttttattattgttgtt |
3792 |
T |
|
| Q |
209 |
tcttttgctaagtgtttttac |
229 |
Q |
| |
|
| |||||||| |||| ||||| |
|
|
| T |
3791 |
tattttgctatgtgtgtttac |
3771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 29085530 - 29085615
Alignment:
| Q |
144 |
ttgcatcatgtcattttatgtacttgcctcaccctaatggaaaaatgactttcattattgttctttcttttgctaagtgtttttacca |
231 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||| || ||| |||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
29085530 |
ttgcatcatttcattttatgtacttgcct--ccctaatgggaaaaagaattttgttattgttgtttcttttgttaagtgtgtttacca |
29085615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University