View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_5 (Length: 525)
Name: NF18917_low_5
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Complemental strand, 7258337 - 7257902
Alignment:
| Q |
9 |
agcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaacttttc |
108 |
Q |
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| T |
7258337 |
agcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaacttttc |
7258238 |
T |
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| Q |
109 |
gaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttct |
208 |
Q |
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| T |
7258237 |
gaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttct |
7258138 |
T |
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| Q |
209 |
tttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagcat |
308 |
Q |
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| T |
7258137 |
tttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagcat |
7258038 |
T |
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| Q |
309 |
cagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacac------acnnnnnnnnnnnnnctgtcatctatta |
402 |
Q |
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| T |
7258037 |
cagaacaacttggagtagtaagttgattt-----------cattcatcctctttttttacacacacaaaaaaaaaaaaaaaaaaaaactgtcatctatta |
7257949 |
T |
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| Q |
403 |
attgtggttcatgttgtactaagattgaaattctattataactgtga |
449 |
Q |
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| T |
7257948 |
attgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 455 - 517
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
| Q |
455 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg |
517 |
Q |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg |
7257800 |
T |
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