View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_6 (Length: 489)
Name: NF18917_low_6
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 188 - 483
Target Start/End: Complemental strand, 40853116 - 40852821
Alignment:
| Q |
188 |
ttgaccggataagattttgaaattagagttaaaaacaaataacttaatttttaaggttgaaatgcaattcaatataattgcatgtatgctaatttcaaaa |
287 |
Q |
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| T |
40853116 |
ttgaccggataagattttgaaattagagttaaaaacaaataacttaatttttaaggtggaaatgcaattcaatataattgcatgtatgctaatttcaaaa |
40853017 |
T |
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| Q |
288 |
gacaaagcaacctgaaaattgttggaaactgttaactctctcatactcaactcaactttttgcatacgtagaacaagcactataaattcacatccatttc |
387 |
Q |
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| T |
40853016 |
gacaaagcaacctgaaaattgttggaaactgttaactctctcatactcaactcaactttttgcatacgtagaacaagcactataaattcacatccatttc |
40852917 |
T |
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| Q |
388 |
tttcattctttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttatgatgttcttcctcttcatctcac |
483 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40852916 |
tttcattctttcaacaaaaacaaggcaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttatgatgttcttcctcttcatttcac |
40852821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 40846169 - 40846056
Alignment:
| Q |
346 |
tttgcatacgtagaacaagcactataaattcacatccatttctttcattctttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaat |
445 |
Q |
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| T |
40846169 |
tttgcatgcgtagagcaagcactataaattcacatccatttcttccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaat |
40846070 |
T |
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| Q |
446 |
gtgtctgtctttta |
459 |
Q |
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| T |
40846069 |
gtgtctgtctttta |
40846056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 40853258 - 40853138
Alignment:
| Q |
42 |
agttgtactatccaaagggtttagtctaccaaaagagactaaatttctataacatgatgaaccaaagtttaaattttggtcgagagaaaatggctatatt |
141 |
Q |
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| T |
40853258 |
agttgtactatccaaagggtttagtctaccaaaagagactaaacttctataacatgatgaaccaaagtttaaatcctggtcgagag-aaatggctatatt |
40853160 |
T |
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| Q |
142 |
tagcgtccgacaaaccatatgg |
163 |
Q |
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| T |
40853159 |
tagcgtcggacaaaccatatgg |
40853138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 364 - 459
Target Start/End: Complemental strand, 40841596 - 40841501
Alignment:
| Q |
364 |
gcactataaattcacatccatttctttcattctttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtctttta |
459 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841596 |
gcactataaattcacatccatttcttccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtctttta |
40841501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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