View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18917_low_7 (Length: 460)
Name: NF18917_low_7
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_7 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 1339784 - 1339342
Alignment:
| Q |
1 |
ttaattgtttacatggacattatcaatttcttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttgccggtggatttctggggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1339784 |
ttaattgtttacatggacattatcaatttcttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttgccggaggatttctggggc |
1339685 |
T |
|
| Q |
101 |
gttatgctgtaggccgtctagtggcaatgaattaccaagctcgtatgggaatgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1339684 |
gttatgctgtaggccgtctagtggcaatgaattaccaagctcgtatgggaatgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttt |
1339585 |
T |
|
| Q |
201 |
tctttggggagctctaactactgaagtaaggctgttgcttagtactagatttttaatttgttgtgttatttaagttactctctaaatgttttaaaatgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1339584 |
tctttggggagctctaactactgaagtaaggctgttgcttagtactagatttttaatttgttgtgttatttaagttactctctaaatgttttaaaatgga |
1339485 |
T |
|
| Q |
301 |
aggctaatgatttatcgacttttctgtttgaagaaattaccctcgtatccgttaccaactcatgaggttgaatccagatccgtcatccctactgagtttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1339484 |
aggctaatgatttatcgacttttctgtttgtagaaattaccctcgtatccgttaccaactcatgaggttgaatccagatccgtcatccctattgagtttg |
1339385 |
T |
|
| Q |
401 |
aagtaagaaatgatagaaatagagatgtttgtgcccttttctt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1339384 |
aagtaagaaatgatagaaatagagatgtttgtgcccttttctt |
1339342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 31941623 - 31941178
Alignment:
| Q |
1 |
ttaattgtttacatggacattatcaatttcttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttgccggtggatttctggggc |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |
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|
| T |
31941623 |
ttaattgtttacatgaacattattgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggc |
31941524 |
T |
|
| Q |
101 |
gttatgctgtaggccgtctagtggcaatgaattaccaagctcgtatgggaatgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
31941523 |
gttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgggaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttt |
31941424 |
T |
|
| Q |
201 |
tctttggggagctctaactactgaagtaaggctgttgct--tagtactagatttttaatttgttgtgttatttaagttactctctaaatgttttaaaatg |
298 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |||| ||||| |
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|
| T |
31941423 |
tctttggggagctcttgccactgaagtaaggccattgcttatagtactagttttttattttgttgtgttatttaagttactctgtaaatatttttaaatg |
31941324 |
T |
|
| Q |
299 |
gaaggctaatgatttatcga-cttttctgtttgaagaaattaccctcgtatccgttaccaactcatgaggttgaatccagatccgtcatccctactgagt |
397 |
Q |
| |
|
||||| |||||||||||| | ||||||||| | |||||||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
31941323 |
gaaggttaatgatttatccatcttttctgtccgtagaaattaccgtcatatccgttaccaactcatgaggttgtatcgagatcagtcatccctactgagt |
31941224 |
T |
|
| Q |
398 |
ttgaagtaagaaatgatagaaatagagatgtttgtgcccttttctt |
443 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
31941223 |
ttgaagtaagaactgataaaaatagagatgtttgtgcctttttctt |
31941178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 13538120 - 13537942
Alignment:
| Q |
52 |
atggagaatgttgttgacatcttgaaatttgccggtggatttctggggcgttatgctgtaggccgtctagtggcaatgaattaccaagctcgtatgggaa |
151 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||| ||| |||| ||||||||| |||||||||| || || |||||||| |||||| | ||||||| |
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|
| T |
13538120 |
atggagaatgtggttgacattttgaaatttgttggtgggtttttgggacgttatgctttaggccgtcttgtagccatgaattatcaagctagaatgggaa |
13538021 |
T |
|
| Q |
152 |
tgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttttctttggggagctctaactactgaagtaag |
230 |
Q |
| |
|
|||||||||| |||| |||||||| || |||||||||||||| |||||||| ||||||||||| | ||||||||||| |
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| T |
13538020 |
tgatggctgctgggtgttatggccttccccaatttcggatgcgcgtttttctctggggagctcttcccactgaagtaag |
13537942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 9391958 - 9391514
Alignment:
| Q |
1 |
ttaattgtttacatggacattatcaatttcttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttgccggtggatttctggggc |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
9391958 |
ttaattgtttacatgaacattattgatttcttgaagcctaagtatgttctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggc |
9391859 |
T |
|
| Q |
101 |
gttatgctgtaggccgtctagtggcaatgaattaccaagctcgtatgggaatgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttt |
200 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9391858 |
gttatgctgtgggccgtctagtggccatgaattatcaagctcgaatgggaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttt |
9391759 |
T |
|
| Q |
201 |
tctttggggagctctaactactgaagtaaggctgttgct--tagtactagatttttaatttgttgtgttatttaagttactctctaaatgttttaaaatg |
298 |
Q |
| |
|
||||||||||||||| | ||||||||||||| || || ||||||| | |||||| ||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
9391758 |
tctttggggagctcttgccactgaagtaaggccatttcttatagtacttgttttttattttgttgtgttatttaagttactctctaaatatttttaaatg |
9391659 |
T |
|
| Q |
299 |
gaaggctaatgatttatcgacttttctgtttgaagaaattaccctcgtatccgttaccaactcatgaggttgaatccagatccgtcatccctactgagtt |
398 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||| || |||||||||||||||||| |||||| ||| ||||| |||||||| |||||||| |
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|
| T |
9391658 |
gaaggttaatgatttatcatcttttctgtttgtagaaattaccgtcatatccgttaccaactcataaggttgtatcgagatcagtcatcccaactgagtt |
9391559 |
T |
|
| Q |
399 |
tgaagtaagaaatgatagaaatagagatgtttgtgcccttttctt |
443 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
9391558 |
tgaagtaagaactgatagaaatagagatgtttgtgcctttttctt |
9391514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 5641654 - 5641225
Alignment:
| Q |
10 |
tacatggacattatcaatttcttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttgccggtggatttctggggcgttatgctg |
109 |
Q |
| |
|
|||||||| ||||| | || ||||||||||| ||| | |||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
5641654 |
tacatggatattattgaatttttgaagcctaaatatatattgatggagaatgttgttgacatattgaaatttgctggtgggtatctggggcgttatgctg |
5641555 |
T |
|
| Q |
110 |
taggccgtctagtggcaatgaattaccaagctcgtatgggaatgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttttctttgggg |
209 |
Q |
| |
|
|||| ||||||||||| ||| |||| |||||| | ||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
5641554 |
taggacgtctagtggccatgcattatcaagctagaatgggaatgatggctgcggggtcgtacggccttcctcaatttcggatgcgtttttttctttgggg |
5641455 |
T |
|
| Q |
210 |
agctctaactactgaagtaaggctgttgctt--agtactagatttttaatttgttgtgttatttaagttactctctaaatgttttaaaatggaaggctaa |
307 |
Q |
| |
|
||||| |||| ||||||||| | |||| ||||||| ||||||| |||| |||||||| |||||| |||||||||| ||||| || ||| | ||| |
|
|
| T |
5641454 |
cgctcttcctacccaagtaaggccatagcttgaagtactaaatttttattttgatgtgttatctaagttggtctctaaatg-tttaatattgaatgttaa |
5641356 |
T |
|
| Q |
308 |
tg------atttatcgacttttctgtttgaagaaattaccctcgtatccgttaccaactcatgaggttgaatccagatccgtcatccctactgagtttga |
401 |
Q |
| |
|
|| |||||| ||| ||||||||| |||| ||||| || |||||| ||||||||||||||||| ||| ||||| || ||||| | |||||||| |
|
|
| T |
5641355 |
tgatttgtatttatatactcttctgtttgtagaatttaccttcatatccgctaccaactcatgaggttatatcgagatctgttatccccaaggagtttga |
5641256 |
T |
|
| Q |
402 |
agtaagaaatgatagaaatagagatgtttgt |
432 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
5641255 |
agtaagaactgatagaaatagagatgtttgt |
5641225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 2273 - 2320
Alignment:
| Q |
392 |
ctgagtttgaagtaagaaatgatagaaatagagatgtttgtgcccttt |
439 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
2273 |
ctgagtttgaaggaagaattgatagaaatagagatgtttgtggccttt |
2320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 30166051 - 30166102
Alignment:
| Q |
31 |
ttgaagcctaagtatgttctgatggagaatgttgttgacatcttgaaatttg |
82 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||| |||| ||||| |
|
|
| T |
30166051 |
ttgaagcctaagtatgttttaatggagaatgtggttgacatattgagatttg |
30166102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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