View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18917_low_9 (Length: 442)
Name: NF18917_low_9
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 14508801 - 14508390
Alignment:
| Q |
18 |
aaatgatgatgtatacagtaatagaaagacatggcccaagagatgatgttagcatgcaatacatgaaatggtcacaacattttcaattgccatgtttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14508801 |
aaatgatgatgtatacagtaatagaaagacatggcccaagagatgatgttagcatgcaatacatgaaatggtcacaacattttcaattgccatgtttcat |
14508702 |
T |
|
| Q |
118 |
gcccttttaggatttaattgtgttttagttttgaacatgaaaagttggtcatgacacttaaactcattagacaaaatcattgtttagcatcactgtttca |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14508701 |
gcctttttaggatttaattgtgttttagttttgaacatgaaaagttggtcatgacacttaaactcattagacaaaatcattgtttagcatcactatttca |
14508602 |
T |
|
| Q |
218 |
cccttgcaaaaccttaatatattcctaattggcctcttttgatttaccttttggcgtttaaaccttataatatacaccaacatgtagagatagattcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14508601 |
cccttgcaaaaccttaatatattcctaattggcctcttttgatttaccttttggcgtttaaaccttataatatacaccaacatgtagagatagattcatc |
14508502 |
T |
|
| Q |
318 |
atttaaattctagcacctaccttcttctcatgattctattctcttctttttataaccactttgccaatataccactttttaaaattctaaagttagatgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14508501 |
atttaaattctagcacctaccttcttctcatgattctattctcttctttttataaccactttgccaatataccactttttaaaattctaaagttagatgc |
14508402 |
T |
|
| Q |
418 |
cttaatttgata |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14508401 |
cttaatttgata |
14508390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University