View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18918_high_5 (Length: 418)

Name: NF18918_high_5
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18918_high_5
NF18918_high_5
[»] chr5 (2 HSPs)
chr5 (150-402)||(3938686-3938920)
chr5 (42-137)||(3938545-3938643)
[»] chr7 (6 HSPs)
chr7 (243-321)||(12651704-12651782)
chr7 (155-223)||(47606574-47606642)
chr7 (242-321)||(12504948-12505027)
chr7 (334-396)||(12485932-12485994)
chr7 (334-396)||(12507364-12507426)
chr7 (334-396)||(12658250-12658312)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 150 - 402
Target Start/End: Original strand, 3938686 - 3938920
Alignment:
Q  150 ctgcaacaagcatcctctccaagaaatggaaccaactatggctctcacttctcaatcttgattttgacgaccaaggctctccaaacttcttagcttttcg 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3938686 ctgcaacaagcatcctctccaagaaatggaaccaactatggctctcagttctcactcttgattttgacgaccaaggctctccaaacttcttagcttttcg 3938785  T
Q  250 acattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtggcttcattcaaatatgtgatccatatgat 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| ||||||||||||||||    
T  3938786 acattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattcc------------------ttcaaagatgtgatccatatgat 3938867  T
Q  350 atcaatcgattcatttctgttgctgtaaaacgaggaattgataatcttacctt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3938868 atcaatcgattcatttctgttgctgtaaaacgaggaattgataatcttacctt 3938920  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 3938545 - 3938643
Alignment:
Q  42 gtgattatcacaaatacattatttgattctctttctcacttgaaatgtcctcccctactccgaatatggac---ataatcagcacattgccagactccg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  3938545 gtgattatcacaaatacattatttgattctctttctcacttgaaatgtcctcccctactccgaatgtggacataataatcagcacattgccagactccg 3938643  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 12651704 - 12651782
Alignment:
Q  243 cttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg 321  Q
    ||||||||| ||||||||||| ||||||||||| ||||||| |  ||| ||| |||| ||| ||||| |||||||||||    
T  12651704 cttttcgactttttgtctactcagtcatgctcacgcgtgacccaacctcgccaatccaatcgttccgactcaaatgtgg 12651782  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 47606642 - 47606574
Alignment:
Q  155 acaagcatcctctccaagaaatggaaccaactatggctctcacttctcaatcttgattttgacgaccaa 223  Q
    |||||||||||||| |||| |||||||| ||||||||||||| |||| ||| || | || |||||||||    
T  47606642 acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaa 47606574  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 12504948 - 12505027
Alignment:
Q  242 gcttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg 321  Q
    |||||||||| ||| ||||||| |||||||||||| |||||| |  | |||||||||||||  ||||  |||||||||||    
T  12504948 gcttttcgacttttcgtctactcagtcatgctcatccgtgaccccacattgcccatccgattgttccacctcaaatgtgg 12505027  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 12485932 - 12485994
Alignment:
Q  334 atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct 396  Q
    |||||||||| ||||||||||||||||  || |||||||||| |||  ||||||||| |||||    
T  12485932 atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct 12485994  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 12507364 - 12507426
Alignment:
Q  334 atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct 396  Q
    |||||||||| ||||||||||||||||  || |||||||||| |||  ||||||||| |||||    
T  12507364 atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct 12507426  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 12658250 - 12658312
Alignment:
Q  334 atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct 396  Q
    |||||||||| ||||||||||||||||  || |||||||||| |||  ||||||||| |||||    
T  12658250 atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct 12658312  T

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