View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18918_low_1 (Length: 694)
Name: NF18918_low_1
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 300 - 596
Target Start/End: Original strand, 10819580 - 10819878
Alignment:
| Q |
300 |
atttatgtcacttatacgttacataattgacatgtatataaacttgttagccatataagttaatgttaattttcatatatatacatgtaaaaacataact |
399 |
Q |
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| T |
10819580 |
atttatgtcacttatacgttacataattgacatgtatataaacttgttagccatataagttaatgttaattttcatatatatacatgtaaaaacataact |
10819679 |
T |
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| Q |
400 |
ct--gtctatatatgtagtacctgttggcgcttttgaaagagtatttgacctcacaaatggggattggagttgaataaggattattaacagaaaccttag |
497 |
Q |
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| T |
10819680 |
ctctgtctgtatatgtagtacctgttggcgcttttgaaagagtatttgacctcacaaatggggattggagttgaataaggattattaacagaaaccttag |
10819779 |
T |
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| Q |
498 |
ccaaatattcaacattgttcatgctcactttcttgaaatccacgtcagtaacacttgcttctggcttggccatatcaccaattttttcagacacaaagt |
596 |
Q |
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| T |
10819780 |
ccaaatattcaacattgttcatgctcactttcttgaaatccacgtcagtaacacttgcttctggcttggccatatcaccaattttttcagacacaaagt |
10819878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 10819334 - 10819516
Alignment:
| Q |
20 |
gttgtgtcctttgccttcaaagaccctggatctggtattgtccctgatgctatctcccttcaccacccaacnnnnnnn-gttgagatcaataatggaaaa |
118 |
Q |
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| T |
10819334 |
gttgtgtcctttgccttcaaagaccctggatctggtattgtccctgatgctatctcccttcaccacccaacaaaaaaaagttgagatcaataatggaaaa |
10819433 |
T |
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| Q |
119 |
atagatcattgacaaataacatattgattcaatg-atgatattgattatacaccggacacgacaaagacactgacacatcatt |
200 |
Q |
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| T |
10819434 |
atagatcattgacaaataacatattgattcaatgaatgatattgattatacactggacacgacaaaaacactgacacgtcatt |
10819516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 569 - 685
Target Start/End: Original strand, 10819919 - 10820038
Alignment:
| Q |
569 |
atatcaccaattttttcagacacaaagtacaatgattagtgnnnnnnncttctttgt---tgatgatgatgattagagaataatgtaagaacctatggat |
665 |
Q |
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| T |
10819919 |
atatcaccaattttttcagacacgaagtacaatgattagtgtttttttcttctttgttgatgatgatgatgattacagaataatgtaagaacctatggat |
10820018 |
T |
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| Q |
666 |
ttatagtgaccggtcctatg |
685 |
Q |
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| T |
10820019 |
ttatagtgaccggtcctatg |
10820038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 511
Target Start/End: Complemental strand, 30029728 - 30029634
Alignment:
| Q |
417 |
acctgttggcgcttttgaaagagtatttgacctcacaaatggggattggagttgaataaggattattaacagaaaccttagccaaatattcaaca |
511 |
Q |
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||||||| || |||||||||||||| |||| ||||||||| || || | ||| ||||||||||| |||| |||||||||||||| |||||| |
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| T |
30029728 |
acctgttagcacttttgaaagagtacttgatctcacaaattggaatagaagtagaataaggatttgaaacattgaccttagccaaatactcaaca |
30029634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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