View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18918_low_2 (Length: 648)
Name: NF18918_low_2
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 4358737 - 4359257
Alignment:
| Q |
19 |
aatgcatcagcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtc |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
4358737 |
aatgcatcggcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttc |
4358836 |
T |
|
| Q |
119 |
caaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtc |
218 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4358837 |
caaatccgggaagtgccggggaagcttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtc |
4358936 |
T |
|
| Q |
219 |
gtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatac |
318 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
4358937 |
ttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatac |
4359036 |
T |
|
| Q |
319 |
tcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagct |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4359037 |
tcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagct |
4359136 |
T |
|
| Q |
419 |
tgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4359137 |
tgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaggccacacgtatcatactccatac |
4359236 |
T |
|
| Q |
519 |
tctcttggttattattggtac |
539 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
4359237 |
tctcttagtaattattggtac |
4359257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 4353533 - 4353014
Alignment:
| Q |
19 |
aatgcatcagcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtc |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
4353533 |
aatgcatcggcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttc |
4353434 |
T |
|
| Q |
119 |
caaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtc |
218 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4353433 |
caaatccgggaagtgccggggaagcttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtc |
4353334 |
T |
|
| Q |
219 |
gtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatac |
318 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
4353333 |
ttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatac |
4353234 |
T |
|
| Q |
319 |
tcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagct |
418 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4353233 |
tcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagct |
4353134 |
T |
|
| Q |
419 |
tgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatac |
518 |
Q |
| |
|
| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4353133 |
t-ctacggcgtttgaccatcatgttgaggtccatcattagttttccctttgatataccttttcttaacatgaacaaagccacacgtatcatactccatac |
4353035 |
T |
|
| Q |
519 |
tctcttggttattattggtac |
539 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4353034 |
tctcttggttattattggtac |
4353014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 92 - 539
Target Start/End: Complemental strand, 4350083 - 4349627
Alignment:
| Q |
92 |
tcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagcttt |
191 |
Q |
| |
|
|||||||||| | | ||||||| |||| | | ||||| || |||| |||||||| | ||||| ||||||||||||||||| |||| |||||||| || |
|
|
| T |
4350083 |
tcaactgcctggtcataggagttcgtcgagaaccggggagcaccggggaagcctcacctatcacctcattattgtttaccattttctctaacacagcctt |
4349984 |
T |
|
| Q |
192 |
aaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaat |
282 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | |||| |
|
|
| T |
4349983 |
aaccgcattaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaat |
4349884 |
T |
|
| Q |
283 |
ttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgat |
382 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
4349883 |
ttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgat |
4349784 |
T |
|
| Q |
383 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4349783 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttct |
4349684 |
T |
|
| Q |
483 |
taacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4349683 |
taacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
4349627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 349 - 524
Target Start/End: Original strand, 43475430 - 43475611
Alignment:
| Q |
349 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
442 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| ||||| || |||| |||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
|
| Q |
443 |
tgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctctt |
524 |
Q |
| |
|
| ||| ||||||||||||| |||||||| || |||||||| |||||||| || |||||||||| ||||||||| ||| |||| |
|
|
| T |
43475530 |
ttaggcccatcattagtttgccctttgacataccttttctcaacatgaagaaggccacacgtaccatactccacactttctt |
43475611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 400 - 524
Target Start/End: Original strand, 43486106 - 43486230
Alignment:
| Q |
400 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagcca |
499 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| || || | |
|
|
| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
43486205 |
T |
|
| Q |
500 |
cacgtatcatactccatactctctt |
524 |
Q |
| |
|
|||||| ||||||||| |||||||| |
|
|
| T |
43486206 |
cacgtaccatactccacactctctt |
43486230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University