View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18918_low_3 (Length: 588)
Name: NF18918_low_3
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 23 - 571
Target Start/End: Complemental strand, 36149690 - 36149142
Alignment:
| Q |
23 |
agctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaagaccgagaagaagaacttgtcaattacacatatgcactcaaaataga |
122 |
Q |
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| T |
36149690 |
agctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaagaccaagaagaagcacttgtcaattacacatgtgcactcaaaataga |
36149591 |
T |
|
| Q |
123 |
tgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgccgccaccactgcatggtgtc |
222 |
Q |
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| T |
36149590 |
tgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgccgccaccactgcatggtgtc |
36149491 |
T |
|
| Q |
223 |
gaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctc |
322 |
Q |
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| T |
36149490 |
gaagtaattccacacacaatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctc |
36149391 |
T |
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| Q |
323 |
ctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccat |
422 |
Q |
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| T |
36149390 |
ctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccat |
36149291 |
T |
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| Q |
423 |
tcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacgtttggaatat |
522 |
Q |
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| T |
36149290 |
tcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacgtttggaatat |
36149191 |
T |
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| Q |
523 |
gtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaag |
571 |
Q |
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| T |
36149190 |
gtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaag |
36149142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 404 - 569
Target Start/End: Complemental strand, 36083412 - 36083247
Alignment:
| Q |
404 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
503 |
Q |
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| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
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| Q |
504 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttca |
569 |
Q |
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| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttca |
36083247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 36083533 - 36083446
Alignment:
| Q |
103 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctc |
187 |
Q |
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| T |
36083533 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctc |
36083446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 36149799 - 36149636
Alignment:
| Q |
103 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctcctt------ |
196 |
Q |
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| T |
36149799 |
acatgtgcactcaaaatagatgagaaagaagaaga---ctctcccaagctagaaaaagaagtgcaaatgaaggaaagtgattctccgcctccttcaccac |
36149703 |
T |
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| Q |
197 |
caccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaaga |
263 |
Q |
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| T |
36149702 |
caccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
36149636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 36083556 - 36083456
Alignment:
| Q |
260 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaa---cactctcctaatcaaggacaagaagtagcacacgtgaagga |
356 |
Q |
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| T |
36083556 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaagga |
36083457 |
T |
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| Q |
357 |
a |
357 |
Q |
| |
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| T |
36083456 |
a |
36083456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 36149822 - 36149759
Alignment:
| Q |
260 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
323 |
Q |
| |
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| T |
36149822 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaagaagaagactctcc |
36149759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 103 - 473
Target Start/End: Original strand, 26527381 - 26527763
Alignment:
| Q |
103 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgc |
202 |
Q |
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| T |
26527381 |
acatgtgcactcaaaatagatgagatagaagaa---cactctcccaagctagaaaaagaagtgcacatgaatgaaagtgattttccgcctccttcaccac |
26527477 |
T |
|
| Q |
203 |
------cgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
296 |
Q |
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| T |
26527478 |
taccaccgccactgctgtatgaagtggaagtgattccccacaccatggaagctcatgttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
26527577 |
T |
|
| Q |
297 |
aatagacgacaaagaagaacactctcctaatcaaggac---------aagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaat |
387 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||| |||||| || |||| |||||||| |||||| |||||| |||||| |||||||| |
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| T |
26527578 |
aatagacgacaaagaagaacagtctcctaagcaaggacaagaagaagaagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaat |
26527677 |
T |
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| Q |
388 |
gactctccaccaccattgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactca |
473 |
Q |
| |
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| T |
26527678 |
gattctccaccaccaccgcatgaagtggaagccattcttgaatacgaattcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 26527358 - 26527421
Alignment:
| Q |
260 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
323 |
Q |
| |
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||||||||||||| || |||||||||| ||||| |||||||| || | ||||||||||||||| |
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| T |
26527358 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaacactctcc |
26527421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 26527498 - 26527544
Alignment:
| Q |
31 |
gaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
77 |
Q |
| |
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||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
26527498 |
gaagtggaagtgattccccacaccatggaagctcatgttcacaaaga |
26527544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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