View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18918_low_4 (Length: 477)
Name: NF18918_low_4
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 77 - 460
Target Start/End: Complemental strand, 22517659 - 22517276
Alignment:
| Q |
77 |
tcaattgagaggccaatctaagtcaacttcctcattaccaaaggaaattatggtgaggataccatttgtttattcaagcatcaccaccatagaaatattc |
176 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22517659 |
tcaattgagaggccaatctaagtcaactccctccttaccaaaggaaattatggtgaggataccatttgtttattcaagcatcaccaccatagaaaagaac |
22517560 |
T |
|
| Q |
177 |
atctccaacaacaccggtgtgttttattctgcagatgagtattacaatcagatgataaaaaatcatccacaacttatttcaattgaaacaaaccacaaag |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22517559 |
atctccaacaacaccggtgtgttttattctgcagatgagtattacagtcagatgatcaaaaatcatccacaacttgtttcaattgaaacaaaccacaaag |
22517460 |
T |
|
| Q |
277 |
gtgggattaatttgaattctaccaacttctctggattttcaaacatcaaaaacttgtacataactggacaccataatggagccataactttttgggatgc |
376 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22517459 |
gtgggattaacttgaattctaccaacttctctggattttcaaacatcaaaaacttgtacataactggacaccataatggaggcataactttttgggatgc |
22517360 |
T |
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| Q |
377 |
atcaggccccttcttcatcacagttttgcaattaaagcagcagagtaaaattgatcattctttaagtggtgttcccttgacagt |
460 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22517359 |
atcaggtcccttcttcatcacaggtttgcaattaaagcagcagagtaaaaatgatcattctttaagtggtgttcccttgacagt |
22517276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 22517972 - 22517893
Alignment:
| Q |
1 |
tctcattgccgtgtacaatggctccgccgtgggcagcttttgaatggtggagtttttatgatgctcggctatacactcaa |
80 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22517972 |
tctcattgccgtgtacaatggctccgccgtgggcagcatttgaatggtggagtttttatgatgctcggctatacactcaa |
22517893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37191469 - 37191548
Alignment:
| Q |
1 |
tctcattgccgtgtacaatggctccgccgtgggcagcttttgaatggtggagtttttatgatgctcggctatacactcaa |
80 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37191469 |
tctcattgccgtgtacaatggctccgtcgtgggcagcttttgaatggtggagtttttatgatgctcggctatacactcaa |
37191548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 214 - 419
Target Start/End: Complemental strand, 9710559 - 9710354
Alignment:
| Q |
214 |
agtattacaatcagatgataaaaaatcatccacaacttatttcaattgaaacaaaccacaaaggtgggattaatttgaattctaccaacttctctggatt |
313 |
Q |
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||||||| | ||| ||||| |||| | ||||||| |||||| ||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||||| |
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| T |
9710559 |
agtattatagtcaaatgatcaaaagttatccacagcttattccaattgaaacaaatcacaaagatgggcttaacctgagttctgccaacttcactggatt |
9710460 |
T |
|
| Q |
314 |
ttcaaacatcaaaaacttgtacataactggacaccataatggagccataactttttgggatgcatcaggccccttcttcatcacagttttgcaattaaag |
413 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
9710459 |
ttcaaacattaaaaacttgtacataactggacaccataatggagccataacattttgggatgcatcatgtcccttcttcatcccagttttgcaattaaag |
9710360 |
T |
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| Q |
414 |
cagcag |
419 |
Q |
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|||||| |
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| T |
9710359 |
cagcag |
9710354 |
T |
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