View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18918_low_7 (Length: 363)
Name: NF18918_low_7
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 45237451 - 45237120
Alignment:
| Q |
13 |
aatatcccacatgacaatatactatatacccaaagacacactcataacatggaagctagacttaataaaaagacaatatatattgaaatgctaacaaatc |
112 |
Q |
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| T |
45237451 |
aatatcctacatgacaatatactatatacccaaagacacactcataacatggaagctagacttaataaaaagacaatatatattgaaatgctaacaaatc |
45237352 |
T |
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| Q |
113 |
atctgtcaactgatgcagaatttgttccacagattaaataatttcagagaagttgtacattcaagcacttccatagcaggacctgattccccatccatat |
212 |
Q |
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| T |
45237351 |
atctgtcaactgatgcagaatttgtttcacagattaaataatttcagagaagttgtacattcaagcacttccatagcaggacctgattccccatccatat |
45237252 |
T |
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| Q |
213 |
tgaggttgttgttaagccaaggttacttacctcattttcaatgtaaaatgaacctagatcaattatcaaaagtaatactcctaatatggttgatgaaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45237251 |
tgaggttgttgttaagccaaggttacttacctcattttcaatgtaaaatgaacctagatcaattatcaaaagtaatactccttatatggttgatgaaata |
45237152 |
T |
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| Q |
313 |
agctcgagtatccaattaattaccttccacaa |
344 |
Q |
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| T |
45237151 |
agctcgagtatccaattaattaccttccacaa |
45237120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 7830381 - 7830160
Alignment:
| Q |
82 |
aagacaatatatattgaaatgctaacaaa-tcatctgtcaactgatgcagaatttgttccacagattaaataatttcagagaagttgtacattcaagcac |
180 |
Q |
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| T |
7830381 |
aagacaatatatattgaatcattaacaaaatcatctggcatttgatgcagaatttgtttcacatattaaataatttcagaggagttgtatattcaagcac |
7830282 |
T |
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| Q |
181 |
ttccatagcaggacctgattccccatccatattgaggtt---------------gttgttaagccaaggttacttacctcattttcaatgtaaaatgaac |
265 |
Q |
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||| | ||||| || |||| |||||||||||||||| |||||| ||||||||||| |||| |||| |||||||||||||||| |
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| T |
7830281 |
ttcatttgcagg--ttgtttccacatccatattgaggttgaactaagctaatgagttgtttagccaaggttatttacttcatagtcaatgtaaaatgaac |
7830184 |
T |
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| Q |
266 |
ctagatcaattatcaaaagtaata |
289 |
Q |
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|||||||||||| |||||||||| |
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| T |
7830183 |
ctagatcaattacgaaaagtaata |
7830160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 22980120 - 22980171
Alignment:
| Q |
37 |
tatacccaaagacacactcataacatggaagctagacttaataaaaagacaa |
88 |
Q |
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| T |
22980120 |
tatacccaaagacacactcataatatggaagctagacttaatataaagacaa |
22980171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 23808284 - 23808233
Alignment:
| Q |
37 |
tatacccaaagacacactcataacatggaagctagacttaataaaaagacaa |
88 |
Q |
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| T |
23808284 |
tatacccaaagacacactcataatatggaagctagacttaatataaagacaa |
23808233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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