View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18918_low_8 (Length: 290)
Name: NF18918_low_8
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 14789616 - 14789878
Alignment:
| Q |
17 |
agaaacatctttaccaactatattaagcttcctaaactctttattttataataaaaatgacaattaagcattataatcacaagtgttttctggtccttaa |
116 |
Q |
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| T |
14789616 |
agaaacatctttaccaactatattaaccttcctaaactctttattttataataaaaatgacaattaaccattataatcacaagtgttttctggtccttaa |
14789715 |
T |
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| Q |
117 |
tctaataccctaagtcagctatacacaaggaaaataattataatttaactatactaaagtaaaataaagaacatggtcctcacgactacaatctgaacaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789716 |
tctaataccctaagtcagctatacacaaggaaaataattgtaatttaactatactaaagtaaaataaagaacatggtcctcacgactacaatctgaacaa |
14789815 |
T |
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| Q |
217 |
tcatgcaggcaatgaacaaannnnnnnatatttcatgtctcttatttataagtacttacctat |
279 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14789816 |
tcatgcaggcaatgaacaaatttttttatatttcatgtctcttatttataagtacttacctat |
14789878 |
T |
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