View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18918_low_9 (Length: 230)
Name: NF18918_low_9
Description: NF18918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18918_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 35374819 - 35374981
Alignment:
| Q |
33 |
tagtggaacaagttgatcgattcatttagctaagacttgttagtcaatggcctttttcgaaatgttgtcatttgatgattctcttgaatcttgatcatat |
132 |
Q |
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| T |
35374819 |
tagtggaacaagttgatcgattcatttagctaagacttgttagtcaatggcctttttcgaaatgttgtcatttgatgattctcttgaatcttgatcatat |
35374918 |
T |
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| Q |
133 |
ttaattttgaagccaaagtgtttcgttgggatagtacaacttgatcaaacatgatatccgtgg |
195 |
Q |
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| T |
35374919 |
ttaattttgaagccaaagtgtttcgttgggatagtacaacttgatcaaacatgatatccgtgg |
35374981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35356136 - 35356170
Alignment:
| Q |
1 |
aatagaatgtttgagtggatgcttaatggatgtag |
35 |
Q |
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| T |
35356136 |
aatagaatgtttgagtggatgcttaatggatgtag |
35356170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35341167 - 35341201
Alignment:
| Q |
1 |
aatagaatgtttgagtggatgcttaatggatgtag |
35 |
Q |
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| T |
35341167 |
aatagaatgtttgagtggatgcttaatggttgtag |
35341201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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