View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18920_high_5 (Length: 399)
Name: NF18920_high_5
Description: NF18920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18920_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 26045856 - 26045465
Alignment:
| Q |
18 |
atgccaagaatgaagaagtcataccatacacaggttcctgaagtgtaaaataaaat----------tgaagtgtaatannnnnnnnattatcgaaataat |
107 |
Q |
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| T |
26045856 |
atgcaaagaatgaagaagtcataccatacacaggttcctgaagtgtaaaataaaataaaataaaattgaagtgtaatattttttttattatcgaaataat |
26045757 |
T |
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| Q |
108 |
gaagtgtttggaagtaatggaagatgcagtattggattttcccacactagtgtttgttccacccaaaataaacaatcatcttccttttctcactcacacc |
207 |
Q |
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| T |
26045756 |
gaagtgtttggaagtaatggaagatgcagtattggattttcccacactagtgtttgttccacccaaaataaactatcatcttccttttctcactcacacc |
26045657 |
T |
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| Q |
208 |
acgccacgcccaatatcaatttcctgaatccaaccaacacatcgtcttcgttggggtttatctatcacacacataattcaaccctactctcaaacctctt |
307 |
Q |
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| T |
26045656 |
acgccacgcccaatatcaatttcctgaatccaaccaacacatcgtcttcgttggggtttatctatcacacacataattcaaccctactctcaaacctctt |
26045557 |
T |
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| Q |
308 |
cagccaaaaactaactaaaccctactcttccccaatcacgattacaaccttctctttttgtgatttaccacacactctaaacgctgcacgtt |
399 |
Q |
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| T |
26045556 |
catccaaaaactaactaaagcctactcttccccaatcacgattacaaccttctctttttgtgatttaccacacactctaaacgctgcacgtt |
26045465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 26046046 - 26046080
Alignment:
| Q |
23 |
aagaatgaagaagtcataccatacacaggttcctg |
57 |
Q |
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| T |
26046046 |
aagaatgaagaaggcataccatacacaggttcctg |
26046080 |
T |
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