View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18920_low_2 (Length: 541)
Name: NF18920_low_2
Description: NF18920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18920_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 27444405 - 27443895
Alignment:
| Q |
11 |
cacagaaaaaggacaagattaaatgctgatgacgacataaggagcataacctatataatacacccatcaagacaataaattatnnnnnnnttactgcaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
27444405 |
cacagaaaaaggacaagattaaatgctgatgacgacataaggagcataacctatataataaacccatcaagacaataaattataaaaaaattactgcaat |
27444306 |
T |
|
| Q |
111 |
aataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatatgtttcatttgtatacatgcacttannnnnnnnnnnngacaaaaattaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
27444305 |
aataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatacgtt-catttgtatacatgcacttattttattttt--gacaaaaattaa |
27444209 |
T |
|
| Q |
211 |
caaaaattaattaagacggcatattttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27444208 |
caaaaattaattaagacggcatattttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtg |
27444109 |
T |
|
| Q |
311 |
ctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcggtattgtaat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27444108 |
ctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagaatagtctgtgggtggacatttttcttcggtattgtaat |
27444009 |
T |
|
| Q |
411 |
ctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggca |
510 |
Q |
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| T |
27444008 |
ctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttggagctctgaaggaca |
27443909 |
T |
|
| Q |
511 |
cacaacattaatgt |
524 |
Q |
| |
|
||||||||| |||| |
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| T |
27443908 |
cacaacattgatgt |
27443895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 101 - 524
Target Start/End: Original strand, 27432298 - 27432715
Alignment:
| Q |
101 |
ttactgcaataataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatatgtttcatttgtatacatgcacttannnnnnnnnnnnga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
27432298 |
ttactgcaataataattgaaaatacttgtggtttatattacatgacaaatgtgtctgtatacgtttcatttgtatacatgcacttattttattttt--ga |
27432395 |
T |
|
| Q |
201 |
caaaaattaacaaaaattaattaagacggcatattttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagca |
300 |
Q |
| |
|
|||| | || ||||||||||||||||||||||||||||| | || ||| || |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
27432396 |
caaaga----cataaattaattaagacggcatattttgtttgatcgtgaagtttaatttgatgggcagaaggtgatggcgtaatcgggtcttgcaaagca |
27432491 |
T |
|
| Q |
301 |
agtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27432492 |
agtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcg |
27432591 |
T |
|
| Q |
401 |
gtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagct |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
27432592 |
gtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcacttggagct |
27432691 |
T |
|
| Q |
501 |
ctgaagggcacacaacattaatgt |
524 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
27432692 |
ctgaagggcacacaacattaatgt |
27432715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 235 - 524
Target Start/End: Original strand, 27214717 - 27215006
Alignment:
| Q |
235 |
tttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatag |
334 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27214717 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatag |
27214816 |
T |
|
| Q |
335 |
ctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcggtattgtaatctccacgacaacaatatttatctt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27214817 |
ctataagcacccgggcactggttcttgaaaaccatagaatagtctgtgggtggacatttttcttcggtattgtaatctccacgacaacaatatttatctt |
27214916 |
T |
|
| Q |
435 |
catttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgt |
524 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
27214917 |
catttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttggagctctgaaggacacacaacattgatgt |
27215006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 235 - 524
Target Start/End: Original strand, 27220679 - 27220968
Alignment:
| Q |
235 |
tttgtttgctgatggtgttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatag |
334 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27220679 |
tttgtttggtcatggagttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatag |
27220778 |
T |
|
| Q |
335 |
ctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcggtattgtaatctccacgacaacaatatttatctt |
434 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
27220779 |
ctataagcaccggggcattggttcttgaaaatcatagagtagtttgtgggtggacatttttcttcagtattgaaatctccacgacaacaatatttatctt |
27220878 |
T |
|
| Q |
435 |
catttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
27220879 |
catttaaagccaaacaagcactcttacaggcaatcacactcccatcagtaccaataacttggagctctgaagggcacacaacattaatgt |
27220968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 251 - 524
Target Start/End: Original strand, 27207362 - 27207635
Alignment:
| Q |
251 |
gttcaagctgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggc |
350 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||| |
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| T |
27207362 |
gttcaagctgatgggcagaaggtgattgcatagtcgggtcttgcaaagcaagtgaaaatgctgctcttatcgtcgtaagcataactgtaagcaccggggc |
27207461 |
T |
|
| Q |
351 |
actggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaaca |
450 |
Q |
| |
|
||| || |||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
27207462 |
actcgtccttgaaaatcttagagtagtctgtgggtggacatttttcttcagtattgaaatctccacgacaacaatatttatcttcctttaaagccaaaca |
27207561 |
T |
|
| Q |
451 |
agcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgt |
524 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||| ||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
27207562 |
agcgctcttacaagcaaacacactcccatcagaaccaatcacctggagctctgaaggacacacaacattaatgt |
27207635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 297 - 487
Target Start/End: Original strand, 27409658 - 27409848
Alignment:
| Q |
297 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttc |
396 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| ||| | || || ||||||||||||||||||||||| | ||| ||||||||| | | |
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|
| T |
27409658 |
agcaagtgaaagtgctgctcgtattatcgtaagcatagctataggcatcaggacattggttcttgaaaaccatagagtaatttgtaggtggacatgtcgc |
27409757 |
T |
|
| Q |
397 |
ttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacct |
487 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
27409758 |
ttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaacct |
27409848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 297 - 487
Target Start/End: Original strand, 27388702 - 27388892
Alignment:
| Q |
297 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttc |
396 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| | || || ||||||| || | | ||||||| ||||||||||||| || | |
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|
| T |
27388702 |
agcaagtgaaagtgctgctcttatcatcgtaagcatagctataagcttctggacattggttctcaaatatctcggagtagtttgtgggtggacatgttgc |
27388801 |
T |
|
| Q |
397 |
ttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacct |
487 |
Q |
| |
|
||||| ||| || ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||| | ||||||| |||| |
|
|
| T |
27388802 |
ctcggtgttgaaacttccacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaacct |
27388892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 27416404 - 27416234
Alignment:
| Q |
297 |
agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagagtagtctgtgggtggacatttttc |
396 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||| | || || ||||||| |||| ||| ||||| ||||||||| | ||| | | |
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|
| T |
27416404 |
agcaagtgaaagtgctgctattatcatcgtaagcatagctataagcatcaggacattggttctcaaaaaacatggagtaatctgtgggtaggcatgtacc |
27416305 |
T |
|
| Q |
397 |
ttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaa |
467 |
Q |
| |
|
||||| |||||||||||||||||||||||| || | ||| ||||||| ||||||||||||||||||| |
|
|
| T |
27416304 |
ctcggtgatgtaatctccacgacaacaatattgatatgtattaaaagccatgcaagcactcttacaagcaa |
27416234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 439 - 524
Target Start/End: Original strand, 20952530 - 20952615
Alignment:
| Q |
439 |
taaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgt |
524 |
Q |
| |
|
||||||||||||||| || |||||||| |||||| ||||||||| ||| |||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
20952530 |
taaagccaaacaagcgcttttacaagccaccacactcccatcagaaccggtcacttggagctcttaaggacacacaatattaatgt |
20952615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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