View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18920_low_3 (Length: 415)
Name: NF18920_low_3
Description: NF18920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18920_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 7832031 - 7831648
Alignment:
| Q |
1 |
tgtacttctcagaaataggtacatcttctggaacaatatatgccttcaatttcccttgagattcatccaagctcattgagattgtatctttctctatact |
100 |
Q |
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| T |
7832031 |
tgtacttctcagaaataggtacatcttctggaacaatatatgccttcaatttcccttgag--------------------attgtatctttctctatact |
7831952 |
T |
|
| Q |
101 |
cctcaacaaatcttccacttcaggatccaaatactctacattacttgagcttgaagcttcctctacagaacaattttggcatttcaacagaataacaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7831951 |
cctcaacaaatcttccacttcaggatccaaatactctacattacttgagcttgaagcttcctctacagaacaattttggcatttcaacagaataacaata |
7831852 |
T |
|
| Q |
201 |
tttctcaccctctcccaaaaggtttctttcccattccagcttctccaaacaagtggatctccatcttgtaactcaacgcttccccaatagcgacgtcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7831851 |
tttctcaccctctcccaaaaggtttctttcccattccagcttctccaaacaagtggatctccatcttgtaactcaacgcttccccaatagcgacgtcttg |
7831752 |
T |
|
| Q |
301 |
gagctgagacttcatcttcgactcctttccagaacaaactctctccagttcctctcggtttctcttgacacatctcttcattctgtacatcctttctctg |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7831751 |
gagctgagacttcatcttcggctcctttccagaacaaactctctccagttcctctcggtttctcttgacacatctcttcattctatacatcctttctctg |
7831652 |
T |
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