View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18920_low_4 (Length: 406)
Name: NF18920_low_4
Description: NF18920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18920_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 34892509 - 34892896
Alignment:
| Q |
1 |
atgcagtaatgccacagcaaagtacctagaaatgaatcacaagccatagaaaacagggtcaccaaaatgaacttaagtatatacgcaaagctaaatatcc |
100 |
Q |
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| T |
34892509 |
atgcagtaatgccacagcaaagtacctagaaatgaatcacaagccatagaaaacagggtcactaaaatgaacttaagtatatacgcaaagctaaatatcc |
34892608 |
T |
|
| Q |
101 |
taagtcctaacaatagtttacaattactacttcataggaatcaagcatcataaaagctctagaactaaagaatggaaatgaggcaagannnnnnnaacta |
200 |
Q |
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| T |
34892609 |
taagtcctgacaatagtttacaattactacttcataggaatcaagcatcataaaagctctagaactaaagaatggaaatgaggcaagatttttttaacta |
34892708 |
T |
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| Q |
201 |
attttgcataagataatgagaaaggagtaaaattcataccatagtggagcatatgaggatgataagtcaagaaatggataaggccacctgtttttcaaaa |
300 |
Q |
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| T |
34892709 |
attttgcataagataatgagaaaggagtaaaattcataccatagtggagcatatgaggatgataagtcaagaaatggataaggccacctgtttttcaaaa |
34892808 |
T |
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| Q |
301 |
caagaaaacttatgttagacagtgatgtactgtgnnnnnnnncaagtagttgaaataaaactnnnnnnncaaaggcttataccagagat |
389 |
Q |
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| T |
34892809 |
caagaaaacttatgttagacagtgatgtactgtgtttttttctaagtagttgaaataaaact-aaaaaacaaaggcttataccagagat |
34892896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 43842749 - 43842837
Alignment:
| Q |
233 |
ttcataccatagtggagcatatgaggatgataagtcaagaaatggataaggccacct-gtttttcaaaacaagaaaacttatgttagaca |
321 |
Q |
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| T |
43842749 |
ttcataccataatggagaatattgggatgacaagtcaagaaatgtatatggccacctaattttccagaacaag-aaacttatgttagaca |
43842837 |
T |
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