View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18921_high_3 (Length: 511)
Name: NF18921_high_3
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 9e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 341 - 497
Target Start/End: Complemental strand, 11116332 - 11116178
Alignment:
| Q |
341 |
catacgtctgattaagatctaactcgatccgactgattccacgcaatcaaactaagttccatccaaatcctaactgatgactaacctgtgaaatttgatg |
440 |
Q |
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| T |
11116332 |
catacatctgattaagatctaac--gatccggctgattccatgcaatcaaactaaattccatccaaatcctaactgataactaacctgtgaaatttgatg |
11116235 |
T |
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| Q |
441 |
agtagatgcccaatagataatgtaacaaactccatgagtagtgaaaagtgtcataag |
497 |
Q |
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| T |
11116234 |
agtagatgcccaatagataatgtaacaaactccatgagtagtgaaaagtgtcataag |
11116178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 11116526 - 11116383
Alignment:
| Q |
146 |
atacacttttcaaatcacacctcaagcaaggataatcttaatcataattataattgatggaattaagattgtgcgttgtcattatattgtaactatacga |
245 |
Q |
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| T |
11116526 |
atacacttttcaaatcacacctca-gcaaggataatcttaatcataattataattaatgggattaagattgtgcgttgtcattatgttgtaactatacga |
11116428 |
T |
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| Q |
246 |
cattcaatcacatctagattaattgattaagatcagacgattcag |
290 |
Q |
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| T |
11116427 |
cattcaatcacatctagattaattgattaagatcagacgattcag |
11116383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 498
Target Start/End: Complemental strand, 11104588 - 11104510
Alignment:
| Q |
420 |
actaacctgtgaaatttgatgagtagatgcccaatagataatgtaacaaactccatgagtagtgaaaagtgtcataagt |
498 |
Q |
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| T |
11104588 |
actaacctctgacattttattagtagatgcccaataggtgatgtaacaaattccatgagttgtgaaaattgccataagt |
11104510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 11591151 - 11591092
Alignment:
| Q |
420 |
actaacctgtgaaatttgatgagtagatgcccaatagataatgtaacaaactccatgagt |
479 |
Q |
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| T |
11591151 |
actaacctctgacatttgattagtagatgcccaatggatgatgtaacaaattccatgagt |
11591092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 11116619 - 11116586
Alignment:
| Q |
50 |
cctcatgaaatactcaatttgaaggtaagataac |
83 |
Q |
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| T |
11116619 |
cctcatgaaatgctcaatttgaaggtaagataac |
11116586 |
T |
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