View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18921_low_1 (Length: 635)
Name: NF18921_low_1
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_low_1 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 10262623 - 10263231
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| || ||||||||| |||| |||||||| |||||| ||||||||| |||||| || |||||||||| |
|
|
| T |
10262623 |
ttggaatgaatggcttccctatgaaggcataaaactttcttttcctcgacttagagctatggagttacataattgtccagaactaagggaacatttgcct |
10262722 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10262723 |
agcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
10262822 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10262823 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
10262922 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10262923 |
attagctgttccaaaattgattctgagaagcacttgtctaacacacttgaaactcagttctcttccttctctcactacatttccctcaagtggtctaccc |
10263022 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
10263023 |
acttcattgcaatcacttgaaattgtaaattgtgagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttgagttaa |
10263122 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
| || ||| | | ||||||||||||||||||| |||||||||||||| |||||||||||| |||| || | ||||| |||||||||||||||| |
|
|
| T |
10263123 |
atcgtagctgtgatt---cacttacatcctttccactcgatggtttccctgccctccaaacacttgacatatataagtgtagaagtctggattccattta |
10263219 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
||||| |||||| |
|
|
| T |
10263220 |
tattttagaaag |
10263231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Complemental strand, 10373989 - 10373376
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
10373989 |
ttggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaactaaggggacatttgccc |
10373890 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||| ||| |
|
|
| T |
10373889 |
accaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaataaaagaaa |
10373793 |
T |
|
| Q |
201 |
ttaatatcgatgggcttga---tggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaa |
297 |
Q |
| |
|
| |||||| |||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373792 |
tgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaa |
10373693 |
T |
|
| Q |
298 |
gttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtcta |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10373692 |
gttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcgattctctttcttctctcactgcatttccctcaagtggtcta |
10373593 |
T |
|
| Q |
398 |
cccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatt |
497 |
Q |
| |
|
||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
10373592 |
cccacttcattgcaatcacttgaaattagatactgtgagaatttatccttccttcctcttgaaatgtggagcaattacacatcacttgtgtggctttatt |
10373493 |
T |
|
| Q |
498 |
tatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccat |
597 |
Q |
| |
|
||| | || ||| | | |||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
10373492 |
tatatcgtagctgtgatt---cacttatatcctttccacttgatggtttccctgtcctccaaacacttatgatactgaattgtaggaatctggattccat |
10373396 |
T |
|
| Q |
598 |
ttgtatttcagaaagtcctt |
617 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10373395 |
ttgtatttcagaaagtcctt |
10373376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 10197598 - 10198192
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
10197598 |
ttggaatgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagttacgtaattgtcgagaactaaggggacatttgcct |
10197697 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10197698 |
agcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
10197797 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||| |||| | |
|
|
| T |
10197798 |
ttaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatggaagatgtagtgattcgaaagtgtgctaagct |
10197897 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||||| | |||||| |||||| ||||||||||||||| ||||||| ||||| |||||||| | ||| || | ||||| |||||||||||||||||| |
|
|
| T |
10197898 |
attagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctaccc |
10197997 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
||||||||||||||| |||| ||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10197998 |
acttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagactttatttaa |
10198097 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatt |
598 |
Q |
| |
|
| || ||| | |||||||||||||||||||||||||||||||||||||| || |||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
10198098 |
gtcatagctgt---gatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattccatt |
10198192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 10432188 - 10431580
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| |||||||||||| |||| ||| |||| |||||| ||||||||| |||||| |||||| |||||| |
|
|
| T |
10432188 |
ttggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgtcctgaactaaggggacaattgcct |
10432089 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
||| | |||||||||||||||||||||| ||| ||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
10432088 |
agcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacactatgcattggttgtcgtcaataaagaaag |
10431989 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
|||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||| ||| | ||||||||| | |
|
|
| T |
10431988 |
ttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagtgattgaaaactgtgttaagct |
10431889 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10431888 |
attagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccatcaagtggtctaccc |
10431789 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
10431788 |
acttcattgcaatcacttgaaattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtctttatttat |
10431689 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
|||| |||||| | | ||||||||||||||||||| |||||||||||||| |||||| |||| |||| | |||| || |||||||||||||||| |
|
|
| T |
10431688 |
ggagcagttgtgatt---cacttacatcctttccactcgatggtttccctgccctccaattacttgacatatttaattgcagaagtctggattccattta |
10431592 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10431591 |
tatttcagaaag |
10431580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 10582535 - 10583094
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10582535 |
ttggaataaatggcttccctttgaaggcatacaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
10582634 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagt-aaagaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||| | ||| ||| |
|
|
| T |
10582635 |
agccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcc---cactttgcattggttgtcgtcaataaaaaaaa |
10582731 |
T |
|
| Q |
200 |
attaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagt |
299 |
Q |
| |
|
||||| || |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| || | || ||||| |
|
|
| T |
10582732 |
attaagattgatgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaagatgcagtgatggcaaactgcgttaacc |
10582831 |
T |
|
| Q |
300 |
tattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacc |
399 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10582832 |
tattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctctcactacatttccctcaagtggtctacc |
10582931 |
T |
|
| Q |
400 |
cacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcattta |
499 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
10582932 |
cacttcattgcaatcacttcatatcgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtctttagttc |
10583031 |
T |
|
| Q |
500 |
tggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacactt |
565 |
Q |
| |
|
| | || ||| | | ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10583032 |
tatcgtagctgtgatt---cacttacatcctttccacttgatggtttccctgcgctccgaacactt |
10583094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 10090715 - 10091310
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagtt-acgtaattgtcccaaactaaagggacatttgcc |
99 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
10090715 |
ttggaatgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagtacacgtaattgtcgagaactaaggggacatttgcc |
10090814 |
T |
|
| Q |
100 |
tagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaa |
199 |
Q |
| |
|
|||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10090815 |
tagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaa |
10090914 |
T |
|
| Q |
200 |
attaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagt |
299 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||| | |||| |||| |
|
|
| T |
10090915 |
attaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatggaagatgtagtgattcgaaagtgtgctaagc |
10091014 |
T |
|
| Q |
300 |
tattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacc |
399 |
Q |
| |
|
|||||||| | |||||| |||||| ||||||||||||||| ||||||| ||||| |||||||| | ||| || | ||||| ||||||||||||||||| |
|
|
| T |
10091015 |
tattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctacc |
10091114 |
T |
|
| Q |
400 |
cacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcattta |
499 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10091115 |
cacttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagactttattta |
10091214 |
T |
|
| Q |
500 |
tggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatt |
598 |
Q |
| |
|
| || ||| | |||||||||||||||||||||||||||||||||||||| || |||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
10091215 |
agtcatagctgt---gatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattccatt |
10091310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 10128850 - 10129455
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||| |||||| |||||||||||| |
|
|
| T |
10128850 |
ttggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggctatagagttatggaattgtccagaactaaggggacatttgccc |
10128949 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||| |||| |
|
|
| T |
10128950 |
accaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaataaaaaaaa |
10129046 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||| | ||| |||| | |
|
|
| T |
10129047 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagct |
10129146 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
10129147 |
attagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgagactctattctctttcttctctcactgcatttccctcaagtggactaccc |
10129246 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10129247 |
acttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtattgatttac |
10129346 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
10129347 |
ggagtagttgt---gatgcacttacatcctttccacttgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggattccattta |
10129443 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10129444 |
tatttcagaaag |
10129455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 10519410 - 10520015
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
10519410 |
ttggaatgaatggattcccttcgaaggcataaaatttgcttttcctcaacttaaggctataaagttacgtaattgtccagaactaaggggacatttgccc |
10519509 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| ||| |||| |||| |
|
|
| T |
10519510 |
accaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaaca---ccatctactttgcattggttgtcttcaataaaaaaaa |
10519606 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| ||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| | ||||||||| | |
|
|
| T |
10519607 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaagatgtagagattaaaaagtgtgttaagct |
10519706 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10519707 |
attagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgggactcgattctctttcttctctcactgcatttccctcaagtggtctaccc |
10519806 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || | |
|
|
| T |
10519807 |
acttcattgcaatcacttaatattcaatgttgtgagaatttatccttccttcctcctgaaacgtggatcaattacacatcacttgtgagtcttaagttct |
10519906 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
| || ||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||| |
|
|
| T |
10519907 |
atcgtagctgt---gatacacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatatgtgagtgcaggagtctggattccattta |
10520003 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10520004 |
tatttcagaaag |
10520015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 9840786 - 9841388
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||| |||||| |||| ||||||| |
|
|
| T |
9840786 |
ttggaatgaatggattccctttgaaggcataaa---tgcttttcctcaacttaaggctatagagttacgcaattgtccagaactaaggggatatttgccc |
9840882 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||| |||| |
|
|
| T |
9840883 |
accaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaataaaaaaaa |
9840979 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| ||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | |||||||| | |
|
|
| T |
9840980 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaagatgtagtgattgaaaagtgtgttaaact |
9841079 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841080 |
attagttgttccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccctcaagtggtctaccc |
9841179 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9841180 |
acttcattgcaatcacttcatattcgtagttgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtcttcagttat |
9841279 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
|| | || ||| | |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
9841280 |
ggtggagctgt---gatacacttacatccttcccacttgatggtttccctgcgctccaaacacttaccatacttgattgtaggagtctagattccattta |
9841376 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9841377 |
tatttcagaaag |
9841388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 10361945 - 10361340
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
10361945 |
ttggaatgaatggattccctttgaaggcataaaatgtgcttttcctcaacttagagctatggagttacataattgtccagaactaaggggacatttgccg |
10361846 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
10361845 |
agcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcc---cactttgcattggttgtcgtcaataaaaaatt |
10361749 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||| | | ||| |||| | || | || | | |
|
|
| T |
10361748 |
ttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaacatgcagtgattcaaaagtgcgctatgct |
10361649 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
| | |||| |||||||||||||||||||||||||||||||||| ||||| |||| | |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10361648 |
gtcatctgtgccaaaattgattctgagaagcacttgtcttacactcttgggactcggtaatctttcttctctcactgcatttccctcaagtggtctaccc |
10361549 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
10361548 |
acttcattgcaatcacttcatattgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgactctacatttag |
10361449 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
|| ||| | ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
10361448 |
atcatagctgtggtt---cacttacatcctttccactcgatggtttccctgcgctccgaacacttaccatacgtgattgtaggagtctggattccattta |
10361352 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10361351 |
tatttcagaaag |
10361340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 9851664 - 9852269
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||| ||||||| |||| ||||||| |
|
|
| T |
9851664 |
ttggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccaaaactaaggggatatttgccc |
9851763 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||| ||||||||| ||| |||| |||| |
|
|
| T |
9851764 |
accaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcgttggttgtcttcaataaaaaaaa |
9851860 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| | |
|
|
| T |
9851861 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaagatgtagagattgaaaagtgtgttaagct |
9851960 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||| ||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
9851961 |
attagctgtgccaaaattgattatgagaagcacttgtcttacacacttgagactcgattcactttcttctctcaatgcatttccatcaagtggtctaccc |
9852060 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| || | |
|
|
| T |
9852061 |
acttcattgcaatcacttgatattgaaaattgtgagaatttatccttcctacctcctgaaacatggagcaactacacatcacttgtgagtcttcggttct |
9852160 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
| || ||| | | |||||| |||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| || |||||||||||||||| |
|
|
| T |
9852161 |
atcgtagctgtgatt---cacttaaatcctttccactcgatggtttccctgtgctccaaacacttgacattgatgattggagaagtctggattccattta |
9852257 |
T |
|
| Q |
601 |
tatttcagaaag |
612 |
Q |
| |
|
||||| |||||| |
|
|
| T |
9852258 |
tattttagaaag |
9852269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 10033925 - 10034533
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
10033925 |
ttggaatgaatggattccctttgaaggcataaaatgtgcttttcctcgacttaaggctatagagttatataattgtccagaactaaggggacatttgccc |
10034024 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||| |||| |
|
|
| T |
10034025 |
accaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaataaaaaaaa |
10034121 |
T |
|
| Q |
201 |
ttaatatcgatgggcttga---tggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaa |
297 |
Q |
| |
|
| |||||| |||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||| | |||| |||| | ||| ||| |
|
|
| T |
10034122 |
tgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaa |
10034221 |
T |
|
| Q |
298 |
gttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtcta |
397 |
Q |
| |
|
| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
10034222 |
gctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttggaactcaattctctttcttctctcactgcatttccctcaagtggacta |
10034321 |
T |
|
| Q |
398 |
cccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatt |
497 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10034322 |
cccacttcattgcaatcacttcatattgtaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtctttatt |
10034421 |
T |
|
| Q |
498 |
tatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccat |
597 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
10034422 |
taattcatagttgt---gatgcacttacatcctttccacttgatggtttccctgtcctccaaacacttcagatatggaattgtaggagtctggtttccat |
10034518 |
T |
|
| Q |
598 |
ttgtatttcagaaag |
612 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
10034519 |
ttatatttcagaaag |
10034533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 11780126 - 11779522
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||||||||| ||||||| ||| | ||||| |||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
11780126 |
ttggaatgaatggtttccctttgaaggtataaaatttgcatttcctcgactcaaaactatggagttgcgtaattgtcctgaactaaggggacatttgcct |
11780027 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
11780026 |
accaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaa---ccatctactttgcattggttgtcgtcaataaaagaaa |
11779930 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| | || |||| || || ||| ||||||||||||||||| |||||||||| | |||||||||| | ||||| ||| | |||| | || | |
|
|
| T |
11779929 |
tgaatatcaaaggacttggtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattgaaaagtgtgctgagct |
11779830 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
|| || ||| |||||||||||| ||||||||| |||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779829 |
atcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctctcactgcatttccctcaagtggtctaccc |
11779730 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| |||||||| || ||| |||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
11779729 |
acttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttat |
11779630 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
|||| |||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
11779629 |
ggagtagttgt---gatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccattta |
11779533 |
T |
|
| Q |
601 |
tatttcagaaa |
611 |
Q |
| |
|
||||| ||||| |
|
|
| T |
11779532 |
tattttagaaa |
11779522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 11771159 - 11771750
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||||||| ||| | ||||| |||| ||||||||||| |||||| || |||||| ||| |
|
|
| T |
11771159 |
ttggaatgaatggcttccttttgaaggtataaaatttgcttttcctcgactcaaaactatggagttgcgtaattgtcctgaactaagggtacattttcct |
11771258 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| | ||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
11771259 |
accaaccttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaa---aaccatctactttgcattggttgtcgtcaataaaagaaa |
11771355 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| | || |||| || || ||| || |||||||||||||| |||||||||| | |||||||||| | ||||| ||| | | |||| || | |
|
|
| T |
11771356 |
tgaatatcaacggccttggtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaacatgtagtgattgaaaagtatgttgagct |
11771455 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
|| || ||| |||||||||||| |||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
11771456 |
atcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctaccc |
11771555 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||| |||| ||||| ||| |||| |||||||| || ||| |||||||||||||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
11771556 |
acttcattgcaaatacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagctattacacttcacttgtgagtctttatttat |
11771655 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatt |
598 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||||||||||||||||||||| || |||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
11771656 |
ggagtagttgt---gatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattccatt |
11771750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 311 - 617
Target Start/End: Original strand, 10665698 - 10666001
Alignment:
| Q |
311 |
ccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgc |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10665698 |
ccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctctcactgcatttccctcaagtggtctacccacttcattgc |
10665797 |
T |
|
| Q |
411 |
aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttg |
510 |
Q |
| |
|
|||||||| |||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
10665798 |
aatcacttaatattttgtggtgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgcgtctagatttatgtcaaagttg |
10665897 |
T |
|
| Q |
511 |
taagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaa |
610 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10665898 |
t---gatgcacttacatcctttccacttgatggtttccctgcgctccaaacactttggatacagaattgtaggagtctggtttccatttgtattttagaa |
10665994 |
T |
|
| Q |
611 |
agtcctt |
617 |
Q |
| |
|
||||||| |
|
|
| T |
10665995 |
agtcctt |
10666001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 93 - 618
Target Start/End: Original strand, 10502600 - 10503118
Alignment:
| Q |
93 |
atttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagt |
192 |
Q |
| |
|
|||| ||| |||| ||| ||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||| | ||||||||||| |||||||| | |
|
|
| T |
10502600 |
atttaccttgccacctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgccta---ctttgcattggctgtcgtcatt |
10502696 |
T |
|
| Q |
193 |
aaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgt |
292 |
Q |
| |
|
|| ||| ||||||| ||||||||| || || ||| ||||| |||||||||| |||||| ||||| |||||||||||| | ||||| ||| || ||| |
|
|
| T |
10502697 |
gaaaaaaggtaatatcaatgggcttggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatgtagtcatttgtaggtgt |
10502796 |
T |
|
| Q |
293 |
gttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtg |
392 |
Q |
| |
|
|||| | ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||| || | |||| |||||||||| |||||| | || |
|
|
| T |
10502797 |
gttacgctattatctattccaaaaatgatt-tgagaagcacttgtcttcaacacttggaactctatgatattccatctctcactgtgtttcccaaagatg |
10502895 |
T |
|
| Q |
393 |
gtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtct |
492 |
Q |
| |
|
||||||||||||| ||||| |||||| |||| |||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10502896 |
gtctacccacttctttgcagtcacttagtattaaaaggtgtgagaatttatcctttcttcctgctgaaacgtggagcaattacacattgcttgtgagtct |
10502995 |
T |
|
| Q |
493 |
tcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggat |
592 |
Q |
| |
|
| |||||||||| || ||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||| ||| | | ||||||| | ||||| |
|
|
| T |
10502996 |
tgatttatggagtagctgt---gatggactaacatcctttccacttgatggtttccctgcactccaaagacttaacattagtaactgtaggaatttggat |
10503092 |
T |
|
| Q |
593 |
tccatttgtatttcagaaagtccttt |
618 |
Q |
| |
|
||||||| || || | |||||||||| |
|
|
| T |
10503093 |
tccatttttactttaaaaagtccttt |
10503118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 10665451 - 10665658
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10665451 |
ttggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttagagccatggagttacgtaattgtccaaaactaaagggacatttgcct |
10665550 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||| || |||||| ||||||| || |||||||||||||||||||||| |||| ||| |
|
|
| T |
10665551 |
agccatcttccttgtatagaagaaattgaaattgaagg------tcgtctattagaaacaggtcc---cactttgcattggttgtcgtcaataaaaaaag |
10665641 |
T |
|
| Q |
201 |
ttaatatcgatgggctt |
217 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
10665642 |
ttaaaatcaatgggctt |
10665658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 217 - 616
Target Start/End: Complemental strand, 13853392 - 13852996
Alignment:
| Q |
217 |
tgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||| || | ||||||| | | ||| ||| | ||||||| | | | | || | |||||| |
|
|
| T |
13853392 |
tgatggaaggacccaattgtcatttcttgggagcgattctccttgcacgatgcaacatgcagtgattgaaaagtgtgttatgctgtcatctatgccaaaa |
13853293 |
T |
|
| Q |
317 |
ttgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcac |
416 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||| ||||| || | |||| |||||||||| |||||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
13853292 |
ttgattttgagaagcacttttcttcaacacttgaaactctatgatattccatctctcactgtatttccgtcaagtggtctgccaactccattgcaatcac |
13853193 |
T |
|
| Q |
417 |
ttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagta |
516 |
Q |
| |
|
|||| || ||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||| |||| |||| || ||| | |
|
|
| T |
13853192 |
ttgaaatagaaaaatgtgagaatttatcattccttcctcctgaaacatggagcaattacacatcgcttgcgagtcttactttacggagtagctgt---ga |
13853096 |
T |
|
| Q |
517 |
cacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcct |
616 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||| |||| ||| ||| ||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
13853095 |
tgcacttacatccttccaacttgatggtttccctgcactccaaagacttcggataagtgagtgtaggaatctggattccattaatattttagaaagtcct |
13852996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10079335 - 10079549
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||||||| |||| || ||||| ||||| | ||||||| |||||||||| ||||| ||| |
|
|
| T |
10079335 |
ttggaatcaatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaactaaaggggcattttcct |
10079434 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
||| | ||||||||||||||||||||| | |||||||| ||| | |||||||||||||| ||| |||||| |||||||| |||||||||| |||| |
|
|
| T |
10079435 |
agcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaaca---ccacctactttggattggttgccgtcagtaaaaaaaa |
10079531 |
T |
|
| Q |
201 |
ttaatatcgatgggcttg |
218 |
Q |
| |
|
|||||||| |||| |||| |
|
|
| T |
10079532 |
ttaatatcaatggtcttg |
10079549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10186305 - 10186519
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||||||| |||| || ||||| ||||| | ||||||| |||||||||| ||||||||| |
|
|
| T |
10186305 |
ttggaatcaatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaactaaaggggcatttgcct |
10186404 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
|| | ||||||||||||||||||||| | |||||||| ||| | |||||||||| ||| ||| |||||| |||||||| |||||||||| |||| |
|
|
| T |
10186405 |
agtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggataca---ccacctactttggattggttgccgtcagtaaaaaaaa |
10186501 |
T |
|
| Q |
201 |
ttaatatcgatgggcttg |
218 |
Q |
| |
|
|||||||| |||| |||| |
|
|
| T |
10186502 |
ttaatatcaatggtcttg |
10186519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 332 - 487
Target Start/End: Complemental strand, 10967519 - 10967364
Alignment:
| Q |
332 |
acttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgt |
431 |
Q |
| |
|
||||||||| ||||||| |||||| || | || | ||||||||||||||| | || | ||| || |||||||||||| | ||||||||||||| | |
|
|
| T |
10967519 |
acttgtcttcaacacttgcaactcatttatatttcctctctcactgcattttcatctaatggacttcccacttcattgaagtcacttgatatttccgact |
10967420 |
T |
|
| Q |
432 |
gtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtg |
487 |
Q |
| |
|
||||||||||| | ||| | ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10967419 |
gtaagaatttagcattcttgcctccggaaatgtggagcaattacacatcacttgtg |
10967364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 307 - 616
Target Start/End: Original strand, 10530892 - 10531195
Alignment:
| Q |
307 |
tgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttca |
406 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||| ||||| ||| ||| || |||||| |||||| ||||||| | |||||||||||||||| |
|
|
| T |
10530892 |
tgttcctaaaatgattatgagaagcacttgtcttctacactcggagctctatggtcttccc---ctcactacatttccgaagaatggtctacccacttca |
10530988 |
T |
|
| Q |
407 |
ttgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaa |
506 |
Q |
| |
|
||||| |||||| |||| ||| |||| ||| | ||| | ||||||||||||||||||| |||||||| |||| ||||||| ||||||||| | |
|
|
| T |
10530989 |
ttgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagcagatacacatcgcttgagagtcttattttatggagta |
10531088 |
T |
|
| Q |
507 |
gttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttc |
606 |
Q |
| |
|
| ||| | ||||||||||||| | |||||||||||||||||| |||| || |||| ||| | |||||||||| ||||||| ||| |||||| |
|
|
| T |
10531089 |
gctgt---gatgcacttacatccttccaacttgatggtttccctgcactccgaatactttacatttgtttttgtaggagtatggattcggtttttatttc |
10531185 |
T |
|
| Q |
607 |
agaaagtcct |
616 |
Q |
| |
|
|||||||||| |
|
|
| T |
10531186 |
agaaagtcct |
10531195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 363 - 483
Target Start/End: Complemental strand, 11244308 - 11244188
Alignment:
| Q |
363 |
ttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaac |
462 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||||||| |||||| ||||| ||||| | ||| | | ||| | ||||| ||||||||||| |
|
|
| T |
11244308 |
ttccatctctcactgcatttcctacaaatggtctacccacttctttgcaaacacttcatattcgcaattgtgacagcttaacattcctacctcctgaaac |
11244209 |
T |
|
| Q |
463 |
gtggagcaattacacatcact |
483 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11244208 |
gtggagcaattacacatcact |
11244188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 615
Target Start/End: Original strand, 10679833 - 10679993
Alignment:
| Q |
452 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
551 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| ||||||||| || ||| | ||||||||||||| | ||||||||||||||||| |
|
|
| T |
10679833 |
cctcctgaaacgtggagcagatatacatcgcttgtgagtcttattttatggagtagctgt---gatgcacttacatccttccaacttgatggtttccctg |
10679929 |
T |
|
| Q |
552 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcc |
615 |
Q |
| |
|
| |||| || |||| ||| | |||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
10679930 |
cactccgaatactttacatttgtttttgtaggagtatggattcagtttttatttcagaaagtcc |
10679993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 488
Target Start/End: Original strand, 13397732 - 13397889
Alignment:
| Q |
331 |
cacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcg |
430 |
Q |
| |
|
|||||||||| ||||||||| |||| || | || | ||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||| | |
|
|
| T |
13397732 |
cacttgtcttcaacacttggatctcatttatatttcctctctcactgcatttccagcaaatggtcttcccacttcgttgcagtcacttcgtatagatgag |
13397831 |
T |
|
| Q |
431 |
tgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtga |
488 |
Q |
| |
|
||| |||||||| | ||| | | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13397832 |
tgtcagaatttagcattcttgcgtcctgaaacatggagcaattacacatcacttgtga |
13397889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 617
Target Start/End: Original strand, 10085732 - 10085796
Alignment:
| Q |
553 |
gctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcctt |
617 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||||||||| ||||| ||||||||||| |
|
|
| T |
10085732 |
gctccaaacacttgacatacgtgattgtaggtgtttggattccatttttattttagaaagtcctt |
10085796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 617
Target Start/End: Original strand, 10192652 - 10192716
Alignment:
| Q |
553 |
gctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcctt |
617 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||||||||| ||||| ||||||||||| |
|
|
| T |
10192652 |
gctccaaacacttgacatacgtgattgtaggtgtttggattccatttttattttagaaagtcctt |
10192716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 11129089 - 11129020
Alignment:
| Q |
88 |
gggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaa |
157 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||| |||||| ||||| ||| ||||||| |||||| |
|
|
| T |
11129089 |
gggaaatttgcctagccatctctcttccatagaagaatttgtaaataaaggttgtcctcatctgttggaa |
11129020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 11230137 - 11230092
Alignment:
| Q |
435 |
agaatttatccttccttcctcctgaaacgtggagcaattacacatc |
480 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||||||||||||||||| |
|
|
| T |
11230137 |
agaatttatcgtttcttcctcttgatacgtggagcaattacacatc |
11230092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 10530659 - 10530731
Alignment:
| Q |
88 |
gggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaaca |
160 |
Q |
| |
|
||||||||| |||||||| || ||| ||||||||||||| |||| |||| ||| ||| ||||||||||||| |
|
|
| T |
10530659 |
gggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaaca |
10530731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 13162975 - 13163027
Alignment:
| Q |
74 |
tgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaat |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
13162975 |
tgtcctaaactaaagggacatttgcctagcagtcttccttcaatagatgaaat |
13163027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 13334899 - 13334951
Alignment:
| Q |
74 |
tgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaat |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
13334899 |
tgtcctaaactaaagggacatttgcctagcagtcttccttcaatagacgaaat |
13334951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 617
Target Start/End: Complemental strand, 55746 - 55136
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
55746 |
ttggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaactaaggggacatttgccc |
55647 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
| | | ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||| | || |
|
|
| T |
55646 |
accaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgtcttcaataaaaataa |
55550 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
| |||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||| | ||| |||| | |
|
|
| T |
55549 |
tgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagct |
55450 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
55449 |
attagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaaactccattcactttcttctctcactgcatttccctcaagtggactaccc |
55350 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||| |
|
|
| T |
55349 |
acttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtcttaatatat |
55250 |
T |
|
| Q |
501 |
ggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttg |
600 |
Q |
| |
|
|||||| | | |||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||||| ||||||||| |
|
|
| T |
55249 |
catatagttgtgatt---cacttacatcctttccacttgatggtttccctgccctccaaacacttgacataagtagatgtaggagtctggtttccatttg |
55153 |
T |
|
| Q |
601 |
tatttcagaaagtcctt |
617 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
55152 |
tatttcagaaagtcctt |
55136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 26908813 - 26909297
Alignment:
| Q |
1 |
ttggaatcaatggcttccctttgaaggcataaaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||| ||||||||| ||| || |||| |||| | ||||||||| |||||||| |||| ||||||| |
|
|
| T |
26908813 |
ttggaatcaatggcttccctttgaaggaatgaatttttcttttcctcgactcagaactattgagttgcataattgtccaaaactaaaaggacttttgcct |
26908912 |
T |
|
| Q |
101 |
agccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggttgtcgtcagtaaagaaaa |
200 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| ||||| |||||| ||||||| || ||||| |
|
|
| T |
26908913 |
agcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaaca---ccatctactttacattgggtgtcgtccataccgaaaa |
26909009 |
T |
|
| Q |
201 |
ttaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagtt |
300 |
Q |
| |
|
|||||||| ||||||||| | ||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||| |||| | |||||| | | |
|
|
| T |
26909010 |
ttaatatccatgggcttggtaaaaggaccatattgtcattgcttaagagtgattctccctgtatgatgcaagatgtagtgattcaaaattgtgttgggct |
26909109 |
T |
|
| Q |
301 |
attagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctaccc |
400 |
Q |
| |
|
||||| | | ||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| | ||| || | ||||| |||||||||||||||||| |
|
|
| T |
26909110 |
attaggtttgccaaaattgattctgagaagcacatgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctaccc |
26909209 |
T |
|
| Q |
401 |
acttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtga |
488 |
Q |
| |
|
||||||||||||||| |||| ||| | ||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
26909210 |
acttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcttgaaacctggagcaattacacatcacttgtga |
26909297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 617
Target Start/End: Original strand, 26909332 - 26909423
Alignment:
| Q |
526 |
atcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcctt |
617 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||||||| |||| || | |||||||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
26909332 |
atcatttccgcttgatggtttccctgctctccaaagtcttaaaatttacgattgtaggagtgtggattccatttatatttcagaaactcctt |
26909423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 83 - 617
Target Start/End: Original strand, 11487042 - 11487564
Alignment:
| Q |
83 |
ctaaagggacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaacagagccaaacactttgcattggt |
182 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| ||||| |||| ||| ||| | ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
11487042 |
ctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaaca---ccatctgctttgcattggt |
11487138 |
T |
|
| Q |
183 |
tgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaagaagtagttat |
282 |
Q |
| |
|
|||||||| |||| |||||| ||||| ||| |||||| |||| || |||| || |||| |||||| ||||||||||||| ||| | ||| || |
|
|
| T |
11487139 |
tgtcgtcaataaaaaaaattgatatcaatg------atggaatgaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgat |
11487232 |
T |
|
| Q |
283 |
tcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcattt |
382 |
Q |
| |
|
| | ||||| | ||| | | |||| ||||||||||||| | | |||| || |||| | ||||| |||| || |||| ||||||||||||||| |
|
|
| T |
11487233 |
tgaaaagtgtgtcacgttgtcatctgtgccaaaattgattcagtgcagcaattttcttcaagacttgagactctataagattccgtctctcactgcattt |
11487332 |
T |
|
| Q |
383 |
ccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcac |
482 |
Q |
| |
|
|| | |||||||| |||||||||||||||||| | || ||| |||||||||| ||||||||||||||||||||||||||||||| || | |
|
|
| T |
11487333 |
cctacggagggtctacctacttcattgcaatcactttgtgttcatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctc |
11487432 |
T |
|
| Q |
483 |
ttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtag |
582 |
Q |
| |
|
||||| ||| | |||| || || ||| | |||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
11487433 |
ttgtgtcgcttgagttatttagtagctgtgatg---cacttacatcctttccacttgatggtttccctgcgctccaaagactaaaactatatgattgtag |
11487529 |
T |
|
| Q |
583 |
gagtctggattccatttgtatttcagaaagtcctt |
617 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
11487530 |
gtgtctggattccatttttattttagaaagtcctt |
11487564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 617
Target Start/End: Complemental strand, 44955291 - 44955193
Alignment:
| Q |
519 |
cacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcctt |
617 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||| |||||||| ||||| ||| || |||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
44955291 |
cacttaaatcattcccacttgatggtttccctgtgctccaaagacttaacattagtggttgtaggagtctggattcaattttcattttggaaagtcctt |
44955193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 44955732 - 44955662
Alignment:
| Q |
90 |
gacatttgcctagccatcttccttgcatagaagaaattgtaataaaagggtgttctcatctattggaaaca |
160 |
Q |
| |
|
|||| ||||| || |||||| ||| |||||||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
44955732 |
gacacttgccaagtcatctttcttccatagaagaaattgaaataaaagattgtgctcatctattggaaaca |
44955662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 318 - 504
Target Start/End: Complemental strand, 17850756 - 17850570
Alignment:
| Q |
318 |
tgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcact |
417 |
Q |
| |
|
||||| |||| |||||||||||| ||||||| ||||||| | |||| ||||||||||||||||| | || || || |||||||||||| ||||| |
|
|
| T |
17850756 |
tgattatgaggagcacttgtcttcaacacttgacactcaatgatattccgtctctcactgcatttccgacggatgttcaactcacttcattgcagtcact |
17850657 |
T |
|
| Q |
418 |
tgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggag |
504 |
Q |
| |
|
| ||||| | ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
17850656 |
tcatattagtatgtgtaagaatttatccttcatgcctcctgaaacgtggaacaattacacatcacttgcgagtcttgagttatggag |
17850570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 827895 - 827942
Alignment:
| Q |
81 |
aactaaagggacatttgcctagccatcttccttgcatagaagaaattg |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
827895 |
aactgaagggacatttgcctagccatcttccttccatagaggaaattg |
827942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 144013 - 143961
Alignment:
| Q |
74 |
tgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaat |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
144013 |
tgtcctaaactaaagggacatttgcctagcagtcttccttcaatagatgaaat |
143961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 152318 - 152266
Alignment:
| Q |
74 |
tgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaat |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
152318 |
tgtcctaaactaaagggacatttgcctagcagtcttccttcaatagatgaaat |
152266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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