View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18921_low_10 (Length: 324)
Name: NF18921_low_10
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_low_10 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 34837964 - 34837651
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837964 |
tcatcaacggggttccggagttcctcatgtacagcggtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
34837865 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837864 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
34837765 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837764 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
34837665 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34837664 |
tattgtgctctgtg |
34837651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 2161110 - 2161423
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161110 |
tcatcaacggggttccggagttcctcatgtacagcggtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
2161209 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161210 |
tttttggttcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
2161309 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161310 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctaacattgtgaaggataaatttcaggatgaatttgcaagttttgttcatgagttta |
2161409 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2161410 |
tattgtgctctgtg |
2161423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 4715250 - 4714937
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715250 |
tcatcaacggggttccggagttcctcatgtacagcgatgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
4715151 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715150 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
4715051 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715050 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
4714951 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4714950 |
tattgtgctctgtg |
4714937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 4735056 - 4734743
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4735056 |
tcatcaacgggattccggagttcctcatgtacagcgatgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
4734957 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4734956 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
4734857 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4734856 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
4734757 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4734756 |
tattgtgctctgtg |
4734743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 4709640 - 4709327
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709640 |
tcatcaacgggattccggagttcctcatgtacagcgatgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
4709541 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4709540 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtaaaccttgaagcccttgagaatgtagtatatgag |
4709441 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709440 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
4709341 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4709340 |
tattgtgctctgtg |
4709327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 7066396 - 7066083
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066396 |
tcatcaacggggttccggagttcctcatgtacagcgatgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
7066297 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066296 |
tttttggctcactttttccttggagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
7066197 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7066196 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaacttcaagatgaatttgcaagttttgttcatgagttta |
7066097 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7066096 |
tattgtgctctgtg |
7066083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 4023349 - 4023036
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023349 |
tcatcaacggggttccggagttcctcatgtacagcgatgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
4023250 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023249 |
tttttggctcactttttccttggagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
4023150 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4023149 |
tgggcatacatccacagtgcaatcggacaagtggttgttaggtctgacattgtgaaggataaacttcaagatgaatttgcaagttttgttcatgagttta |
4023050 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4023049 |
tattgtgctctgtg |
4023036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 8189605 - 8189292
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189605 |
tcatcaacggggttccggagttcctcatgtacagcgatgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
8189506 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189505 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
8189406 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8189405 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaactttaggatgaatttgcaagttttgttcatgagttta |
8189306 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8189305 |
tattgtgctctgtg |
8189292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 14291221 - 14291490
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291221 |
tcatcaacggggttccggagttcctcatgtacagcggtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
14291320 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14291321 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgttaaccttgaagcccttgagaatgtagtatatgag |
14291420 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcagg |
270 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291421 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaacttcagg |
14291490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 15944573 - 15944888
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||| ||||||||| | || |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15944573 |
tcatcaatggggttccgaattttctcatgtacagcggtgggcatcttcatacgtgaatctttaatcaagcccatgatgagtccgggaaaagctaggcggg |
15944672 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||| || || |
|
|
| T |
15944673 |
tttttggctcaccttttccttgaagggtgaccagccttaactcccatgctattgtgcgggctatgtcgaccttgatgcccttgagaatgtagtagattag |
15944772 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15944773 |
tgggcatacatccacagtgcaatcagacaagtggctgttaggtttgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
15944872 |
T |
|
| Q |
301 |
tattgtgctctgtgct |
316 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
15944873 |
tattgtgctcagtgct |
15944888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 22855006 - 22855215
Alignment:
| Q |
69 |
gcccatgatgagtccaggaaaagctaggcgggtttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtca |
168 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||||||||| |||| |||||||||||| ||||| ||| | || ||||| | | ||| |||||||||| |
|
|
| T |
22855006 |
gcccataatgagtccggggaaagcgaggcgggtttttggttcaccttttccttgaagtgtgacaagcttcaattcccaagcaatagtgtgggctatgtcg |
22855105 |
T |
|
| Q |
169 |
accttgaagcccttgagaatgtagtatatgagtgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttca |
268 |
Q |
| |
|
|| |||| |||||||||||||||||| || ||||||||||||||||| | ||||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
22855106 |
actttgatgcccttgagaatgtagtagattagtgggcatacatccacgatacaatcggacaagtggctgttgggtttgacattgtgaaggataaacttca |
22855205 |
T |
|
| Q |
269 |
ggatgaattt |
278 |
Q |
| |
|
|||||||||| |
|
|
| T |
22855206 |
ggatgaattt |
22855215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 9573691 - 9573378
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9573691 |
tcatcaacagggttccggagttcctcatgtacagcggtgggaaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
9573592 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9573591 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatgctaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
9573492 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9573491 |
tgggcatacatccacagtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaactttaggatgaatttgcaagttttgttcatgagttta |
9573392 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9573391 |
tattgtgctctgtg |
9573378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 45019293 - 45019606
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45019293 |
tcatcaacggggttccggatttcctcatgcacagcggtgggcatcttcattcgtgaatctttaattaagcccatgatgagtccaggaaaagctaggcggg |
45019392 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||| || || || |
|
|
| T |
45019393 |
tttgtggctcactttttccttgaagggtgaccagccttaattcccatgctattgtgcgggctatgtcaaccttgatgcccttgagaatgtaatagattag |
45019492 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45019493 |
tgggcatacatccacggtgcaatcggacaagtggctgttaggtctgacattgtgaaggataaatttcaggatgaatttgcaagttttgttcatgagttta |
45019592 |
T |
|
| Q |
301 |
tattgtgctctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45019593 |
tattgtgctctgtg |
45019606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 5835 - 5534
Alignment:
| Q |
1 |
tcatcaacggggttccggagttcctcatgtacagctgtgggcaacttcattcgtgaatctttaatcaagcccatgatgagtccaggaaaagctaggcggg |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||| ||| || ||||||||||| |||||||| || ||||| |||| || |
|
|
| T |
5835 |
tcatcaatggggttccggatttcctcatgtacagcagtgggcatcttcattcgtgtatccttgatcaagcccataatgagtccggggaaagcgaggcagg |
5736 |
T |
|
| Q |
101 |
tttttggctcactttttccttgaagggtgaccagccttaactcccatggtaatgtgcgggctatgtcaaccttgaagcccttgagaatgtagtatatgag |
200 |
Q |
| |
|
||||||| || | |||||||||||| |||||| | | || ||||| | | ||| |||||||||| || |||| |||||||||||||||||| || | |
|
|
| T |
5735 |
tttttggttcgccttttccttgaagtctgaccaacttcaattcccaagcaatagtgtgggctatgtcgactttgatgcccttgagaatgtagtagattaa |
5636 |
T |
|
| Q |
201 |
tgggcatacatccacagtgcaatctgacaagtggctgttaggtctgacattgtgaaggataaacttcaggatgaatttgcaagttttgttcatgagttta |
300 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | || |||||||| | |||| |
|
|
| T |
5635 |
tgggcatacatccacggtacaatcggacaagtggctgttgggtttgacattgtgaaggataaacttcaggatgaatttggaggtgttgttcataaattta |
5536 |
T |
|
| Q |
301 |
ta |
302 |
Q |
| |
|
|| |
|
|
| T |
5535 |
ta |
5534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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