View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18921_low_16 (Length: 215)
Name: NF18921_low_16
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 44605406 - 44605277
Alignment:
| Q |
58 |
tgagtattcggtccgagggatcaactaatctcaaagactaattccaagcctctactagcaggggtcaaattgaagacataacaaacatattatttatgaa |
157 |
Q |
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| T |
44605406 |
tgagtattcggtccgagggatcaactaatctcaaagactaattccaagcctctactagcaggggtcaaattgaagacataacaaaca---tatttatgaa |
44605310 |
T |
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| Q |
158 |
ttgatcca--acatgaattgttgatatctaaag |
188 |
Q |
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|||||||| |||| |||||||||||||||||| |
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| T |
44605309 |
ttgatccaacacataaattgttgatatctaaag |
44605277 |
T |
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