View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18921_low_2 (Length: 630)
Name: NF18921_low_2
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 28424011 - 28424398
Alignment:
| Q |
1 |
gtctcccaataccaccacctataatctgcaacaccgtatgactatattaagataaaagtaaaacaagagaactttgtgtgtgtggtgggtggggtttaca |
100 |
Q |
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| T |
28424011 |
gtctcccaataccaccacctataatctgcaacaccgtatgactatattaagataaaagtaaaacaagagaactttgtgtgtgtggtgggtggggtctaga |
28424110 |
T |
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| Q |
101 |
ccaaaacctaagaaaataatcatgtgaacaaacaccatatgcttcattaaaagccttactaggaaaacccaatagataaaaccatgatgtacgnnnnnnn |
200 |
Q |
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| T |
28424111 |
ccaaaacctaagaaaataatcatgtgaacaaacaccatatgcttcattaaaagccttactaggaaaacccaatagataaaaccatgatgtacgaaaaaaa |
28424210 |
T |
|
| Q |
201 |
tgtgcactgcaagg-aaaaaactttaaaactttggggatagggggtatatgtattgaagcttgtacaactttaggtttgtattttgatgatgttagttag |
299 |
Q |
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| T |
28424211 |
tgtgcagtgcaaggaaaaaaactttaaaactttggggatagggggtatatgtattgaagcttgtacaactttaggtttgtattttgatgatgttagttag |
28424310 |
T |
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| Q |
300 |
ggtggcgtttagccagggaaagcaaagttgtttcccatgatgagaaactttgctttttacctgcagctggcagtcatgacctgttgtg |
387 |
Q |
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| T |
28424311 |
ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctttttacctgcagctggcagtcatgacctgttgtg |
28424398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 437 - 618
Target Start/End: Original strand, 28424448 - 28424629
Alignment:
| Q |
437 |
gactttgcattctcaaagaacaaatgactcatttgtgtcataatcctactccaattgcacactattgnnnnnnnnnnnnnnnnnnnnntggttctgatga |
536 |
Q |
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| T |
28424448 |
gactttgcattctcagagaacaaatgactcatttgtgtcataatcctactccaattgcacgctgttgaaacaaaaaattaaaacaaaatggttctgatga |
28424547 |
T |
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| Q |
537 |
aagtgaaatatttcatggttcaatgttacaaaatgcttggctcttcttctctgcatctttcttattgttcctcttctctgct |
618 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28424548 |
aaatgaaatatttcatggttcaatgttacaaaatgcttggctcttcttctctgcatctttcttattgttcctcttctctgct |
28424629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 23388234 - 23388320
Alignment:
| Q |
301 |
gtggcgtttagccagggaaagcaaagttgtttcccatgatgagaaactttgctttttacctgcagctggcagtcatgacctgttgtg |
387 |
Q |
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| T |
23388234 |
gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaaatttgctttttacctgcagctggcagtcctgacctgttgtg |
23388320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 525 - 618
Target Start/End: Original strand, 23388456 - 23388549
Alignment:
| Q |
525 |
tggttctgatgaaagtgaaatatttcatggttcaatgttacaaaatgcttggctcttcttctctgcatctttcttattgttcctcttctctgct |
618 |
Q |
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||||||| |||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23388456 |
tggttctaatgaaaatgaaatatctcatggttcaatggtacaaaatgctcagctcttcttctctgcatctttcttattgttcctcttccctgct |
23388549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 499
Target Start/End: Original strand, 23388367 - 23388430
Alignment:
| Q |
437 |
gactttgcattctcaaagaacaaatgactcatttg-tgtcataatcctactccaattgcacact |
499 |
Q |
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| T |
23388367 |
gactttgcattctaagagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacact |
23388430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 528 - 618
Target Start/End: Original strand, 42840907 - 42840997
Alignment:
| Q |
528 |
ttctgatgaaagtgaaatatttcatggttcaatgttacaaaatgcttggctcttcttctctgcatctttcttattgttcctcttctctgct |
618 |
Q |
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|||| |||||| |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42840907 |
ttctaatgaaaatgaaatgtttcatggttcaatgttacaaaatgctcagcttttcttctctgcatctttcttattgttcctcttctctgct |
42840997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 42840751 - 42840839
Alignment:
| Q |
300 |
ggtggcgtttagccagggaaagcaaagttgtttcc-catgatgagaaactttgctttttacctgcagctggcagtcatgacctgttgtg |
387 |
Q |
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| T |
42840751 |
ggtggcgttaagtcggggaaagtaaagttgttttttcatgatgggaaactttgctttttacctccagttggcagtcatgatctattgtg |
42840839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 29832162 - 29832116
Alignment:
| Q |
253 |
ttgaagcttgtacaactttaggtttgtattttgatgatgttagttag |
299 |
Q |
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| T |
29832162 |
ttgaagcttgtatagcattaggtttgtgttttgatgatgttagttag |
29832116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 24684792 - 24684744
Alignment:
| Q |
252 |
attgaagcttgtacaactttaggtttgtattttgatgatgttagttagg |
300 |
Q |
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| T |
24684792 |
attgaagcttgcatagctttaagtttgtgttttgatgatgttagttagg |
24684744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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