View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18921_low_6 (Length: 414)
Name: NF18921_low_6
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 173 - 382
Target Start/End: Complemental strand, 11646453 - 11646246
Alignment:
| Q |
173 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagacgatgtttattcaaattcagtgcataccacagagacttgagagaactctgag |
272 |
Q |
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| T |
11646453 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagactatgtttattcaaattcagtgcatactacagagacttgagagaact--gag |
11646356 |
T |
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| Q |
273 |
attgcaaagagctataaataaaactttcattcctcattttgccaataatcaaacaaaagggacaaatgcctatagatagtagaatcaaaataatgtcata |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646355 |
attgcaaagagctataaataaaactttcattcctcattttgccaataatcaaacaaaagggacaaatgcctatagatagtagaatcaaaataatgtcata |
11646256 |
T |
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| Q |
373 |
tgtttatggt |
382 |
Q |
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|||||||||| |
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| T |
11646255 |
tgtttatggt |
11646246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 11591743 - 11591827
Alignment:
| Q |
315 |
caataatcaaacaaaagggacaaatgcctatagatagtagaatcaaaataatgtcatatgtttatggtgacttcgataaaatgat |
399 |
Q |
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| T |
11591743 |
caataatcaaacaaaaaggacaaatgcctatagatagtagaatcaaaataatgtcatatgtttatggtgacttcgataaaatgat |
11591827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 11591158 - 11591206
Alignment:
| Q |
30 |
attttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
78 |
Q |
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| T |
11591158 |
attttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11591206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 11646509 - 11646461
Alignment:
| Q |
30 |
attttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
78 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11646509 |
attttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11646461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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