View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18921_low_8 (Length: 406)
Name: NF18921_low_8
Description: NF18921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18921_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 43868617 - 43868229
Alignment:
| Q |
18 |
actataaccaacactactattactcaaaggcatatactctttctcttgttgtgctagtgatacatcattattatcaatattccaatgaaaaacatcatca |
117 |
Q |
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| T |
43868617 |
actataaccaacactactattactcaaaggcatatactctttctcttgttgtgctagtgatacatcattattatcaatattccaatgaaaaacatcatca |
43868518 |
T |
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| Q |
118 |
cttgtcatgtcaaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcatttttggatgcatccatttcattctcttgtttataat |
217 |
Q |
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| T |
43868517 |
cttgtcatgtcaaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcacttttggatgcatccatttcattctcttgtttataat |
43868418 |
T |
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| Q |
218 |
caaacacttgtcctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868417 |
caaacacttgtcctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactc |
43868318 |
T |
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| Q |
318 |
acagaaactatccaagtcacacattccctcaaaatcaacagcaccatttttcacagtacaagtctctaaatcaaaagggttggcatcga |
406 |
Q |
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| T |
43868317 |
acagaaactatccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcga |
43868229 |
T |
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