View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18922_low_1 (Length: 703)
Name: NF18922_low_1
Description: NF18922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18922_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 23 - 696
Target Start/End: Original strand, 8931732 - 8932405
Alignment:
| Q |
23 |
gagaaacccgcacacgctaaacattagatgggacacatgcgagtacacaccaaaaagagataaaaataacgcacagagtgaacgtggttcggcacttcat |
122 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
8931732 |
gagaaacccgcacacgccaaacattagatggaacacatgcgagtacacaccgaaaaaagataaaaataacgcacagattgaacgtggttcggcacctcat |
8931831 |
T |
|
| Q |
123 |
acctgctttcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctgactcggtggtaagagtttagcattgtaaccgcaaggtgctgag |
222 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931832 |
acctgcattcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgag |
8931931 |
T |
|
| Q |
223 |
ttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatgtctactaaacatataaactc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8931932 |
ttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatgtctactaaacaaataaactc |
8932031 |
T |
|
| Q |
323 |
aatgtagcaaatcaaaacctcgctgt-aaatggtcaatacaagcagcatttgatagaataaattatcaaacaaaccttttcaagttatcatgggagcaaa |
421 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8932032 |
aatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgatagaataaataatcaaacaaaccttttcaagttatcatgggagcaaa |
8932131 |
T |
|
| Q |
422 |
acattgcaacaacatattcatttgatagcaagagaacaagaacaatagactaatctttggtttgtgaaattaattattggaaactcaatcnnnnnnnnta |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8932132 |
acattgcaacaacatattcatttgatagcaagagaacaagaacaatagactaatctttggtttgtgaaattaattattggaaactcaatc-aaaaaaata |
8932230 |
T |
|
| Q |
522 |
atattcagaaataatttgcttatggtagaatttcatgggaaaacagctgcagaactatccaaaattttcaatttgtgtttaaaaggattccagaacagaa |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8932231 |
atattcagaaataatttgcttatggtagaatttcatgggaaaacagctgcagaactatccaaaattttcaatttgtgtttaaaaggattccagaacagaa |
8932330 |
T |
|
| Q |
622 |
gttcattttgagctcaaattatgaaggaaattctatccatgggcttcattggagacacatcattctttcatctca |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
8932331 |
gttcattttgagctcaaattatgaaggaaattctgtccataggcttcattggagacacatcattctttcatctca |
8932405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 49443666 - 49443576
Alignment:
| Q |
172 |
aggtgctgactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
262 |
Q |
| |
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||||| |||||| |||||||||||||||| |||||||| |||||| | ||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
49443666 |
aggtgatgactctgtggtaagagtttagccttgtaacctcaaggtacaaagttcaaatcccctcggggacggttgtaaaatggttattagt |
49443576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 50892220 - 50892281
Alignment:
| Q |
172 |
aggtgctgactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
233 |
Q |
| |
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||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||| ||||||| |
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| T |
50892220 |
aggtgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccc |
50892281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 48751426 - 48751378
Alignment:
| Q |
185 |
gtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
233 |
Q |
| |
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|||| ||||| |||||||||||||| |||| |||||||||| ||||||| |
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|
| T |
48751426 |
gtggcaagagcttagcattgtaacctcaagttgctgagttcgaatcccc |
48751378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 36198967 - 36198899
Alignment:
| Q |
185 |
gtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatg |
253 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| |||||||||||||||| | |||| || ||||||||| |
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| T |
36198967 |
gtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatg |
36198899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 23548584 - 23548621
Alignment:
| Q |
193 |
agtttagcattgtaaccgcaaggtgctgagttcaaatc |
230 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||| |
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| T |
23548584 |
agtttagcattgtaacctcgaggtgctgagttcaaatc |
23548621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 31584895 - 31584942
Alignment:
| Q |
186 |
tggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
233 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
31584895 |
tggtaagagcttagcattgtaacctcaaggtactgagttcaaatcccc |
31584942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 18332040 - 18332096
Alignment:
| Q |
185 |
gtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggac |
241 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||| ||||||| |||| ||| ||||||| |
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|
| T |
18332040 |
gtggcaagagcttagcattgtaacctcaaggtactgagtttaaataccctctgggac |
18332096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 43710581 - 43710653
Alignment:
| Q |
183 |
cggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggt |
255 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||||| ||||||| ||||||| | ||||| | ||| ||||||| |
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|
| T |
43710581 |
cggtggtaagagattagccttgtaaccccgaggtgttgagttcgaatcccctcggggacagttgtgaaatggt |
43710653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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