View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18922_low_2 (Length: 310)

Name: NF18922_low_2
Description: NF18922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18922_low_2
NF18922_low_2
[»] chr1 (1 HSPs)
chr1 (13-310)||(41637664-41637961)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 41637664 - 41637961
Alignment:
Q  13 catcatcatctgattacgcaggaacacctcctcaacctcgtagtggtcattccgctgttaatattggaaaatccaaggttgtcatcttcggtggtcttgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41637664 catcatcatctgattacgcaggaacacctcctcaacctcgtagtggtcattccgctgttaatattggaaaatccaaggttgtcgtcttcggtggtcttgt 41637763  T
Q  113 cgacaaaaaatttctcactgatattcttgtctatgatattggttagtgacccttttctctcttcttttgtgggttgttgtcaaaatttggaatttgattc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41637764 cgacaaaaaatttctcactgatattcttgtctatgatattggttagtgacccttttctctcttcttttgtgggttgttgtcaaaatttggaatttgattc 41637863  T
Q  213 gttttgtaatgttgaaattttcagaggctaagctatggtatcaaccggagtgtactggaagtgattcagatggacatgtgggtcccactccacgagca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41637864 gttttgtaatgttgaaattttcagaggctaagctatggtatcaaccggagtgtactggaagtgattcagatggacatgtgggtcccactccacgagca 41637961  T

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