View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18924_high_14 (Length: 308)
Name: NF18924_high_14
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18924_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 21284339 - 21284641
Alignment:
| Q |
4 |
aaaatctacactaatttacattctaagttaaaagagtaaaaatcatcaaaagtcactttacctcaaattctttttaaagaaacattacttttaaactcag |
103 |
Q |
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| T |
21284339 |
aaaatctacactaatttacattctaagttaaaagagtaaaaatcatcaaaagtcactttacctcaaattctttttaaagaaacattacttttaaactcag |
21284438 |
T |
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| Q |
104 |
ctgtaaccaaatcaactgtacatcaaacacttagtagtacagtgtcacttgtgatttggttttggtatgagtaggtgacaaagtactattccttgtgagt |
203 |
Q |
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| T |
21284439 |
ctgtaaccaaatcaactgtacatcaaacacttagtagtacagtgtcacttgtgatttggttttggtatgagtaggtgacaaagtactattccttgtgagt |
21284538 |
T |
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| Q |
204 |
gcacattgttgtcactgtgtggttgagttcaaattcttgttttttacttttgagagctaatgatgttgccatgtgattgtggccatgatgatgatgtcca |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21284539 |
gcacattgttgtcactgtgtggttgagttcaaattcttgttttttacttttgagagctaatgatgttgccatgtgattgtggccatgatgatgatgtgca |
21284638 |
T |
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| Q |
304 |
tct |
306 |
Q |
| |
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||| |
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| T |
21284639 |
tct |
21284641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 38064249 - 38064295
Alignment:
| Q |
240 |
ttgttttttacttttgagagctaatgatgttgccatgtgattgtggc |
286 |
Q |
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||||||||| ||||||||||||||| |||||| |||||||||||||| |
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| T |
38064249 |
ttgttttttgcttttgagagctaataatgttgacatgtgattgtggc |
38064295 |
T |
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