View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18924_low_13 (Length: 329)

Name: NF18924_low_13
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18924_low_13
NF18924_low_13
[»] chr7 (12 HSPs)
chr7 (16-329)||(32210209-32210522)
chr7 (49-119)||(23721482-23721551)
chr7 (72-126)||(24363619-24363673)
chr7 (76-119)||(48917371-48917414)
chr7 (69-119)||(15075110-15075160)
chr7 (74-124)||(19022605-19022655)
chr7 (74-128)||(44241859-44241913)
chr7 (74-127)||(2825248-2825301)
chr7 (85-126)||(28165102-28165143)
chr7 (69-118)||(30456476-30456525)
chr7 (69-126)||(44151498-44151555)
chr7 (73-126)||(47130803-47130856)
[»] chr4 (29 HSPs)
chr4 (70-126)||(11158375-11158431)
chr4 (89-155)||(30377404-30377470)
chr4 (69-126)||(2996568-2996625)
chr4 (72-126)||(11264299-11264353)
chr4 (81-127)||(28615530-28615576)
chr4 (69-119)||(42866063-42866113)
chr4 (69-126)||(18628561-18628618)
chr4 (69-126)||(23819084-23819141)
chr4 (69-126)||(30207589-30207646)
chr4 (69-126)||(49893310-49893367)
chr4 (74-127)||(52259631-52259684)
chr4 (74-119)||(56007679-56007724)
chr4 (75-119)||(17975394-17975438)
chr4 (77-119)||(4798591-4798633)
chr4 (88-126)||(14011248-14011286)
chr4 (70-112)||(49085985-49086027)
chr4 (69-119)||(52735117-52735167)
chr4 (74-119)||(17822890-17822935)
chr4 (69-126)||(17884063-17884120)
chr4 (68-97)||(25793139-25793168)
chr4 (69-122)||(30581699-30581752)
chr4 (82-127)||(32421276-32421321)
chr4 (69-126)||(49219134-49219191)
chr4 (81-126)||(53673676-53673721)
chr4 (76-125)||(55084500-55084549)
chr4 (69-118)||(56480343-56480392)
chr4 (74-118)||(9760440-9760484)
chr4 (69-125)||(42121483-42121539)
chr4 (74-126)||(47800623-47800675)
[»] chr8 (25 HSPs)
chr8 (49-126)||(6864477-6864553)
chr8 (74-126)||(43504751-43504803)
chr8 (75-126)||(39881770-39881821)
chr8 (69-126)||(7918791-7918848)
chr8 (69-126)||(8062324-8062381)
chr8 (69-126)||(9956832-9956889)
chr8 (74-127)||(27028831-27028884)
chr8 (69-118)||(29973076-29973125)
chr8 (69-114)||(30988022-30988067)
chr8 (69-117)||(30627929-30627977)
chr8 (68-119)||(21130608-21130659)
chr8 (73-127)||(8060668-8060722)
chr8 (69-119)||(13652210-13652260)
chr8 (69-119)||(13710853-13710903)
chr8 (74-119)||(1640376-1640421)
chr8 (77-126)||(4762512-4762561)
chr8 (69-126)||(11795087-11795144)
chr8 (81-126)||(20672757-20672802)
chr8 (69-126)||(28769357-28769414)
chr8 (69-126)||(31705080-31705137)
chr8 (69-126)||(36338280-36338337)
chr8 (74-126)||(7714242-7714294)
chr8 (71-119)||(26473777-26473825)
chr8 (74-126)||(30277263-30277315)
chr8 (74-118)||(37353275-37353319)
[»] chr6 (12 HSPs)
chr6 (70-127)||(25100039-25100096)
chr6 (70-126)||(35070485-35070541)
chr6 (80-126)||(10031738-10031784)
chr6 (69-119)||(31812038-31812088)
chr6 (69-126)||(33787763-33787820)
chr6 (80-124)||(2205610-2205654)
chr6 (83-127)||(2455819-2455863)
chr6 (69-127)||(4006709-4006767)
chr6 (76-126)||(4420645-4420695)
chr6 (72-126)||(6647385-6647439)
chr6 (71-125)||(20368199-20368253)
chr6 (74-118)||(33067158-33067202)
[»] chr5 (28 HSPs)
chr5 (69-126)||(41957469-41957526)
chr5 (74-126)||(17368676-17368728)
chr5 (69-126)||(7907876-7907933)
chr5 (69-126)||(15309011-15309068)
chr5 (69-126)||(32194097-32194154)
chr5 (74-126)||(33533557-33533609)
chr5 (81-125)||(36774726-36774770)
chr5 (74-126)||(40534199-40534251)
chr5 (74-125)||(43300878-43300929)
chr5 (80-126)||(12242728-12242774)
chr5 (69-119)||(34245719-34245769)
chr5 (80-118)||(37611241-37611279)
chr5 (80-118)||(37787971-37788009)
chr5 (88-126)||(38104875-38104913)
chr5 (76-126)||(40205092-40205142)
chr5 (74-119)||(8481218-8481263)
chr5 (69-126)||(10272449-10272506)
chr5 (74-127)||(17827524-17827577)
chr5 (69-126)||(18543215-18543271)
chr5 (81-126)||(26005015-26005060)
chr5 (74-119)||(34690873-34690918)
chr5 (69-126)||(36318769-36318826)
chr5 (69-126)||(37588378-37588435)
chr5 (75-115)||(912677-912717)
chr5 (74-126)||(6593299-6593351)
chr5 (73-125)||(11700162-11700214)
chr5 (70-126)||(18875357-18875413)
chr5 (70-126)||(29659347-29659403)
[»] chr3 (22 HSPs)
chr3 (69-126)||(39602228-39602285)
chr3 (69-126)||(1217818-1217875)
chr3 (69-126)||(36646400-36646457)
chr3 (69-126)||(43115051-43115108)
chr3 (74-126)||(21367667-21367719)
chr3 (74-126)||(39980729-39980781)
chr3 (135-206)||(36189710-36189781)
chr3 (69-119)||(24158528-24158578)
chr3 (131-205)||(45541648-45541722)
chr3 (131-205)||(49845459-49845533)
chr3 (69-126)||(237392-237449)
chr3 (74-126)||(2318644-2318697)
chr3 (69-126)||(14548739-14548796)
chr3 (74-119)||(20669172-20669217)
chr3 (81-126)||(37273141-37273186)
chr3 (69-126)||(40665424-40665481)
chr3 (74-119)||(51510218-51510263)
chr3 (74-122)||(8697657-8697705)
chr3 (74-122)||(9049544-9049592)
chr3 (74-118)||(22203430-22203474)
chr3 (74-126)||(25185985-25186037)
chr3 (74-126)||(44295529-44295581)
[»] chr2 (34 HSPs)
chr2 (71-126)||(6988112-6988167)
chr2 (69-119)||(36863650-36863700)
chr2 (73-127)||(43985020-43985074)
chr2 (75-119)||(3078665-3078709)
chr2 (69-125)||(9477947-9478003)
chr2 (74-126)||(16867739-16867791)
chr2 (74-126)||(18840796-18840848)
chr2 (68-119)||(6167308-6167359)
chr2 (83-126)||(34652054-34652097)
chr2 (76-126)||(656795-656845)
chr2 (69-99)||(7751486-7751516)
chr2 (69-127)||(11513893-11513951)
chr2 (131-205)||(15120260-15120334)
chr2 (68-126)||(28933818-28933876)
chr2 (69-119)||(29300640-29300690)
chr2 (70-116)||(35099627-35099673)
chr2 (81-127)||(36852479-36852525)
chr2 (69-126)||(1625895-1625952)
chr2 (69-126)||(1810660-1810716)
chr2 (74-127)||(9174815-9174868)
chr2 (69-126)||(14299649-14299706)
chr2 (74-111)||(29510592-29510629)
chr2 (81-126)||(35379034-35379079)
chr2 (69-126)||(35485912-35485969)
chr2 (74-127)||(40837452-40837505)
chr2 (87-119)||(11393410-11393442)
chr2 (87-119)||(11410071-11410103)
chr2 (74-126)||(12215807-12215859)
chr2 (74-125)||(18882892-18882944)
chr2 (74-126)||(20952355-20952407)
chr2 (74-126)||(26202028-26202080)
chr2 (74-126)||(29316793-29316845)
chr2 (69-125)||(33941904-33941960)
chr2 (74-126)||(43279547-43279599)
[»] chr1 (20 HSPs)
chr1 (72-126)||(49938745-49938799)
chr1 (69-126)||(12564892-12564949)
chr1 (69-126)||(23902085-23902142)
chr1 (69-126)||(33976681-33976738)
chr1 (74-126)||(12564517-12564569)
chr1 (74-126)||(25479581-25479633)
chr1 (74-126)||(27140478-27140530)
chr1 (79-126)||(32548649-32548696)
chr1 (74-119)||(3234040-3234085)
chr1 (74-119)||(5924055-5924100)
chr1 (74-127)||(7137015-7137068)
chr1 (69-126)||(35590910-35590967)
chr1 (69-109)||(5421955-5421995)
chr1 (74-126)||(7472311-7472363)
chr1 (86-126)||(23402043-23402083)
chr1 (74-126)||(26779943-26779995)
chr1 (69-126)||(28689470-28689529)
chr1 (74-126)||(31294539-31294591)
chr1 (74-126)||(38503483-38503535)
chr1 (69-125)||(39596592-39596648)
[»] scaffold0294 (1 HSPs)
scaffold0294 (76-118)||(20203-20245)
[»] scaffold0020 (2 HSPs)
scaffold0020 (131-205)||(159892-159966)
scaffold0020 (69-126)||(159991-160048)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 32210209 - 32210522
Alignment:
Q  16 aaaacaaagtcaatctgtttcnnnnnnnagattaagtcaaacaattgtcatgttaagttataagttgtttttataagctatctttgagagcttatggaaa 115  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32210209 aaaacaaagtcaatctgtttctttttttagattaagtcaaacaattgtcatgttaagttataagttgtttttataagctatctttgagagcttatggaaa 32210308  T
Q  116 taagatgaaaatgtagtttccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaacaattctgtcaa 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32210309 taatatgaaaatgtagtttccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaacaattctgtcaa 32210408  T
Q  216 cccagttaaggaggccataacatccataggtcctttgaaatagtattttcataactaaatgaaatggcaagcttactgattctttaatgggtgagtgact 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32210409 cccagttaaggaggccataacatccataggtcctttgaaatagtattttcataactaaatgaaatggcaagcttactgattctttaatgggtgagtgact 32210508  T
Q  316 gagtcgtatctatc 329  Q
    ||||||||||||||    
T  32210509 gagtcgtatctatc 32210522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 23721482 - 23721551
Alignment:
Q  49 aagtcaaacaattgtcatgttaagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||| ||| |||| ||||  |||||||||||||||||||||||| ||| | |||||||||||||||    
T  23721482 aagtcaaactattttcat-ttaaactataagttgtttttataagctatccttgtgcgcttatggaaataag 23721551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 24363673 - 24363619
Alignment:
Q  72 gttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||||    
T  24363673 gttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaa 24363619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 48917414 - 48917371
Alignment:
Q  76 taagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||    
T  48917414 taagttgttttcataagctatcttggagagcttatgaaaataag 48917371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 15075160 - 15075110
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||||| |||| |||| ||| ||| |||||||||||||||||||    
T  15075160 taagttataagttattttcataaactaccttagagagcttatggaaataag 15075110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 19022655 - 19022605
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaa 124  Q
    ||||||||||||||||||||||| || |||| |||||| ||||||| ||||    
T  19022655 tataagttgtttttataagctatattggagaacttatgaaaataagttgaa 19022605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 44241859 - 44241913
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaatg 128  Q
    ||||||||||||| ||||||||||||  | ||||||| |||||||| ||||||||    
T  44241859 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatg 44241913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 2825301 - 2825248
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    ||||||||||||| | |||||||| | |||| |||||||||||||| |||||||    
T  2825301 tataagttgttttcacaagctatcctagagaacttatggaaataagctgaaaat 2825248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 28165102 - 28165143
Alignment:
Q  85 tttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| | ||||||||||||||||||| ||||||    
T  28165102 tttataagctatcatggagagcttatggaaataagttgaaaa 28165143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 30456525 - 30456476
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    |||||||||||| ||||| |||| ||||||| ||||||||||| ||||||    
T  30456525 taagttataagtggttttcataaactatcttggagagcttatgaaaataa 30456476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 44151555 - 44151498
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| |||| |||||||  | |||||||||||||||| ||||||    
T  44151555 taagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaa 44151498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 47130856 - 47130803
Alignment:
Q  73 ttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||| |||||||||||| |||| ||| || ||||||| ||||||    
T  47130856 ttataagttgttttcataagctatcttggagaacttgtgaaaataagttgaaaa 47130803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 11158431 - 11158375
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||||    
T  11158431 aagttataagttgttttcataagctatcttagagagcttgtggaaataagctgaaaa 11158375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 30377470 - 30377404
Alignment:
Q  89 taagctatctttgagagcttatggaaataagatgaaaatgtagtttccataagttcttcaaaacagt 155  Q
    ||||||||||| ||||||||||| ||||||| |||||| || ||||||||| ||||||| |||||||    
T  30377470 taagctatcttggagagcttatgaaaataagctgaaaaagttgtttccataggttcttccaaacagt 30377404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 2996568 - 2996625
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||||| |||||||||||| |||||| |||| ||||||| ||||||    
T  2996568 taagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaa 2996625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 11264299 - 11264353
Alignment:
Q  72 gttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||| |||||| ||| | ||||||||||||||||||| ||||||    
T  11264299 gttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaa 11264353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 28615530 - 28615576
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  28615530 tgtttttataggctatcttggagagcttatggaaataaggtgaaaat 28615576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 42866063 - 42866113
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||| ||||    
T  42866063 taagctataagttgttttcataagctatccttgagagcttatggaagtaag 42866113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 18628618 - 18628561
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||  |||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  18628618 taagttataaactgttttcataagttatcttggagagcttatggaaataagctgaaaa 18628561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 23819084 - 23819141
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||  |||||| ||||||||||||  ||||||||| |||||||||||||||    
T  23819084 taagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaa 23819141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 30207646 - 30207589
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| |||||||| ||| ||||| ||||||||||||| ||||||    
T  30207646 taagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaa 30207589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 49893310 - 49893367
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||| ||||| |||||||    
T  49893310 taagttataagctgttttcgtaagctatccttgagagcttatggtaataatatgaaaa 49893367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 52259631 - 52259684
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||| ||||||||||||||||||  ||||||||||| ||||||| |||||||    
T  52259631 tataagctgtttttataagctatctgggagagcttatgaaaataagttgaaaat 52259684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 56007679 - 56007724
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||||||||||| |||||| |||||||||| ||||||||    
T  56007679 tataagttgtttttataagttatcttggagagcttatagaaataag 56007724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 17975438 - 17975394
Alignment:
Q  75 ataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||    
T  17975438 ataagctgtttttataagctatcttggagagcttctggaaataag 17975394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 4798633 - 4798591
Alignment:
Q  77 aagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||||||| |||||||||||| ||||||||||| |||||||    
T  4798633 aagttgttttcataagctatcttggagagcttatgcaaataag 4798591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 14011248 - 14011286
Alignment:
Q  88 ataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  14011248 ataagctatcttggagagcttatggaaataagctgaaaa 14011286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 49085985 - 49086027
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatgg 112  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||    
T  49085985 aagttataagttgttttcataagctaccttagagagcttatgg 49086027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 52735117 - 52735167
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||| ||||||||  |||||||||||  ||||||||||||||||||    
T  52735117 taagttatatgttgttttcgtaagctatcttgaagagcttatggaaataag 52735167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 17822935 - 17822890
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||||| |||||||||||| |||| |||||| |||||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataag 17822890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 17884063 - 17884120
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||| ||||||||| ||||||||| || ||||||||||| |||| || ||||||    
T  17884063 taagttatcagttgttttcataagctatattggagagcttatgaaaattagctgaaaa 17884120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 25793168 - 25793139
Alignment:
Q  68 ttaagttataagttgtttttataagctatc 97  Q
    ||||||||||||||||||||||||||||||    
T  25793168 ttaagttataagttgtttttataagctatc 25793139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 30581752 - 30581699
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatg 122  Q
    |||| |||||| |||||| ||||| |||||| ||||| ||||||||||||||||    
T  30581752 taagctataagctgttttaataagttatcttggagagtttatggaaataagatg 30581699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 32421321 - 32421276
Alignment:
Q  82 gtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  32421321 gtttttataagctatcttagagaggttatgaaaataagctgaaaat 32421276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 49219134 - 49219191
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| |||| |||||||  |||| ||||||||||||| ||||||    
T  49219134 taagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaa 49219191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 53673721 - 53673676
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||||||||| ||||||||||| ||||||| ||||||    
T  53673721 tgttttcataagctatcttggagagcttatgtaaataagctgaaaa 53673676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 55084549 - 55084500
Alignment:
Q  76 taagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    ||||||||||| || ||||||||| ||||||||||| ||||||| |||||    
T  55084549 taagttgttttcatgagctatcttagagagcttatgaaaataagctgaaa 55084500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 56480343 - 56480392
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||||||| |||||| |||| ||||||| ||||||||||| ||||||    
T  56480343 taagttataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 9760440 - 9760484
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||||||||||||||||||| || |||| |||||| ||||||    
T  9760440 tataagttgtttttataagctatattggagaacttatgaaaataa 9760484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 42121483 - 42121539
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||| ||||||||||||| || ||||||||| |||| ||| |||||||||| |||||    
T  42121483 taagctataagttgttttcatgagctatcttggagaacttgtggaaataagctgaaa 42121539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 47800623 - 47800675
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||| ||||||||||||  |||||||||| ||||||| ||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaa 47800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 6864553 - 6864477
Alignment:
Q  49 aagtcaaacaattgtcatgttaagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||| ||| |||||| ||||||||||||||||| ||||||||| || ||||||||  ||||||||| ||||||    
T  6864553 aagtcaaactattttcatgt-aagttataagttgttttcataagctattttggagagcttgaggaaataagctgaaaa 6864477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 43504751 - 43504803
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||| ||||||    
T  43504751 tataagatgtttttataagctatcttggagaacttatggaaataagctgaaaa 43504803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 39881821 - 39881770
Alignment:
Q  75 ataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||||||||||||||| | ||||||||||||||||||| ||||||    
T  39881821 ataaattgtttttataagctatcatggagagcttatggaaataagctgaaaa 39881770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 7918848 - 7918791
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| ||||||||||||  ||||||| |||||||||| ||||||    
T  7918848 taagctataagttgttttcataagctatcttgtagagcttgtggaaataagctgaaaa 7918791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 8062324 - 8062381
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||| |||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  8062324 taagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaa 8062381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 9956889 - 9956832
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||||| |||| ||||||| |||| |||||| ||||||| ||||||    
T  9956889 taagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 27028831 - 27028884
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||| |||||| |||||||||||| ||||||||||| ||||||| |||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaat 27028884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 29973076 - 29973125
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    |||| ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  29973076 taagctataagttgttttcataagctatccttgagagtttatggaaataa 29973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 30988067 - 30988022
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaa 114  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||    
T  30988067 taagttataagctgtttttgtaagctatctttgagggcttatggaa 30988022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 30627977 - 30627929
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaata 117  Q
    |||| ||||||||||||| ||||| |||||| |||||||||||||||||    
T  30627977 taagctataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 21130608 - 21130659
Alignment:
Q  68 ttaagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||| ||||||||||| | |||| ||||| |||||||||||||||||||||    
T  21130608 ttaagatataagttgttctcataaactatcattgagagcttatggaaataag 21130659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 8060668 - 8060722
Alignment:
Q  73 ttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    ||||||| |||||| |||||| ||| | ||||||||||||||||||| |||||||    
T  8060668 ttataagctgttttcataagcaatcctagagagcttatggaaataagctgaaaat 8060722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 13652210 - 13652260
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||||||| |||||||||||||||||  | ||||||||| |||||||||    
T  13652210 taagttataaattgtttttataagctattctggagagcttaaggaaataag 13652260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 13710853 - 13710903
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||||||| |||||||||||||||||  | ||||||||| |||||||||    
T  13710853 taagttataaattgtttttataagctattctggagagcttaaggaaataag 13710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 1640421 - 1640376
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||| |||||| ||||||||| ||| ||||||||||||||||||    
T  1640421 tataagctgttttcataagctatatttaagagcttatggaaataag 1640376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 4762512 - 4762561
Alignment:
Q  77 aagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||| ||||||||||||  |||||||||| ||||||| ||||||    
T  4762512 aagttgttttcataagctatcttgaagagcttatgtaaataagctgaaaa 4762561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 11795087 - 11795144
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| || ||| |||||||||  | ||||||||||||||||||| ||||||    
T  11795087 taagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaa 11795144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 20672757 - 20672802
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaa 20672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 28769414 - 28769357
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||| |||||| ||||||||| || ||||| ||||||||||||| ||||||    
T  28769414 taagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaa 28769357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 31705080 - 31705137
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||| |||||| ||||||| || ||||||| ||||||||||||| ||||||    
T  31705080 taagctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaa 31705137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 36338337 - 36338280
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||| |||||||||||  ||||||||||| |||||| ||||||| ||||||    
T  36338337 taagatataagctgtttttataaaatatctttgagaacttatgaaaataagctgaaaa 36338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 7714242 - 7714294
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| || ||||||||| ||||||| ||| ||||||| ||||||    
T  7714242 tataagttgttttcatgagctatcttggagagctcatgaaaataagttgaaaa 7714294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 26473825 - 26473777
Alignment:
Q  71 agttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||| ||||||||||| |||||||||| | ||||||||||| |||||||    
T  26473825 agttgtaagttgttttcataagctatcctagagagcttatgaaaataag 26473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 30277315 - 30277263
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||| |||||||||| | ||||| ||||||||||||| ||||||    
T  30277315 tataagctgttttcataagctatcctagagagtttatggaaataagctgaaaa 30277263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 37353319 - 37353275
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    |||||| ||||||  ||||||||||||||||||||||| ||||||    
T  37353319 tataagctgttttcttaagctatctttgagagcttatgaaaataa 37353275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 25100039 - 25100096
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    ||||||||||||||||| ||||||||||||  ||||||||| |||||||| |||||||    
T  25100039 aagttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaat 25100096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 35070541 - 35070485
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||| ||||||| |||||||| |||||||||||||| ||||||| ||||||    
T  35070541 aagttataagctgtttttgtaagctatgtttgagagcttatgaaaataagttgaaaa 35070485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 10031738 - 10031784
Alignment:
Q  80 ttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  10031738 ttgtttttataagctgtcttggagagcttaaggaaataagatgaaaa 10031784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 31812088 - 31812038
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||| ||||||||||||| |||||||||||| ||||||||||| |||||||    
T  31812088 taagatataagttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 33787820 - 33787763
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||| ||||| |||||| ||||||||||||||||| | ||||||    
T  33787820 taagttataagctgttttcataagttatcttggagagcttatggaaataggctgaaaa 33787763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 2205654 - 2205610
Alignment:
Q  80 ttgtttttataagctatctttgagagcttatggaaataagatgaa 124  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||    
T  2205654 ttgttttcataagctatcttggagagcttatggaaataagctgaa 2205610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 2455819 - 2455863
Alignment:
Q  83 tttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaat 2455863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 4006709 - 4006767
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||| ||||||||||||| ||||||||||  |||||| ||||| ||||||| |||||||    
T  4006709 taagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaat 4006767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 4420645 - 4420695
Alignment:
Q  76 taagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||| ||||||    
T  4420645 taagttattttcctaagctatcttggagagcttatggaaataagctgaaaa 4420695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 6647385 - 6647439
Alignment:
Q  72 gttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||  |||||| |||||||||||| ||||||||||| ||||||| ||||||    
T  6647385 gttataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaa 6647439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 20368253 - 20368199
Alignment:
Q  71 agttataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||||||||||||||| ||||||| |||| |||| |||||| ||||||| |||||    
T  20368253 agttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaa 20368199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 33067158 - 33067202
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||||||||| |||||||||||| |||||||| | |||||||    
T  33067158 tataagttgttttcataagctatcttggagagcttgtagaaataa 33067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 41957526 - 41957469
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||| |||||||||| |||||| |||||| ||||||||||||||    
T  41957526 taagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaa 41957469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 17368676 - 17368728
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  17368676 tataagttgttttcataagctatcttggagaggttatggaaataagctgaaaa 17368728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 7907876 - 7907933
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||||| ||||||| |||| ||||||||||| || |||| ||||||    
T  7907876 taagttataagttgttttgataagctgtcttggagagcttatgaaattaagctgaaaa 7907933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 15309068 - 15309011
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| || ||||||| |||||| |||||| ||||||||||||||    
T  15309068 taagctataagttgttttcattagctatcattgagatcttatgaaaataagatgaaaa 15309011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 32194154 - 32194097
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||| ||||||| ||||||||||||||||||||||  ||||||| ||||||    
T  32194154 taagctataagatgtttttttaagctatctttgagagcttatataaataagctgaaaa 32194097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 33533609 - 33533557
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||| ||||||    
T  33533609 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaa 33533557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 36774770 - 36774726
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||    
T  36774770 tgtttttataagctatcctggagagcttatggaaataagctgaaa 36774726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 40534199 - 40534251
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| ||||||||||   |||||||||||||| |||||||||||    
T  40534199 tataagttgttttcataagctatcccagagagcttatggaagtaagatgaaaa 40534251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 43300878 - 43300929
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||||||||||||| ||||||||||| |||| |||||| ||||||| |||||    
T  43300878 tataagttgtttttgtaagctatcttggagaacttatgaaaataagctgaaa 43300929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 12242774 - 12242728
Alignment:
Q  80 ttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||| |||||||||||| |||||||||||||| |||| ||||||    
T  12242774 ttgttttcataagctatcttggagagcttatggaagtaagctgaaaa 12242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 34245719 - 34245769
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||| |||||||||||||||||||||||| | ||||||| ||| |||||||    
T  34245719 taagctataagttgtttttataagctatcatggagagctgatgaaaataag 34245769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 37611279 - 37611241
Alignment:
Q  80 ttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataa 37611241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 37788009 - 37787971
Alignment:
Q  80 ttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataa 37787971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 38104913 - 38104875
Alignment:
Q  88 ataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  38104913 ataagctatcttagagagcttatggaaataagctgaaaa 38104875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 40205142 - 40205092
Alignment:
Q  76 taagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||||||| | |||||||||| |||||||| ||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagctgaaaa 40205092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 8481218 - 8481263
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||| |||||| ||||| |||||||||| |||||||||||||||    
T  8481218 tataagctgttttcataagttatctttgagggcttatggaaataag 8481263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 10272506 - 10272449
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| |||||| ||||| ||||| ||||| ||||||| ||||||    
T  10272506 taagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaa 10272449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 17827524 - 17827577
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||||||||||| ||||||||||| ||||| ||| | ||||||| |||||||    
T  17827524 tataagttgtttttgtaagctatcttagagaggttacgaaaataagctgaaaat 17827577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 18543271 - 18543215
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| |||||||||| | |||||||||| |||||||| ||||||    
T  18543271 taagatataagttgttttcataagctatcctggagagcttat-gaaataagctgaaaa 18543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 26005060 - 26005015
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||||| ||| ||||||||||||||||||| ||||||    
T  26005060 tgttttcataagctagcttggagagcttatggaaataaggtgaaaa 26005015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 34690873 - 34690918
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||| | |||||| ||||| |||||||||||||||||||    
T  34690873 tataagttgttctcataagccatcttggagagcttatggaaataag 34690918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 36318769 - 36318826
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| ||||||||||| |||||||||||| ||||  ||||| ||||||| ||||||    
T  36318769 taagttttaagttgttttcataagctatcttggagaatttatgtaaataagctgaaaa 36318826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 37588435 - 37588378
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| ||||| |||  | ||||||||||||||||||| ||||||    
T  37588435 taagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 37588378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 912717 - 912677
Alignment:
Q  75 ataagttgtttttataagctatctttgagagcttatggaaa 115  Q
    ||||||||||||||||| ||||||| || ||||||||||||    
T  912717 ataagttgtttttataaactatcttggaaagcttatggaaa 912677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 6593299 - 6593351
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||| |||||||| ||| ||||||||||| ||||||| ||||||    
T  6593299 tataagctgttttgataagctaccttagagagcttatgaaaataagctgaaaa 6593351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 11700162 - 11700214
Alignment:
Q  73 ttataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||||||||||||| ||| |||||| | |||| |||||| |||||||||||||    
T  11700162 ttataagttgttttgatatgctatcgtggagaacttatgaaaataagatgaaa 11700214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 18875357 - 18875413
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||| |||||| ||||| |||| | ||||||||||||||| ||| ||||||    
T  18875357 aagttataagctgttttaataagatatcctggagagcttatggaaacaagttgaaaa 18875413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 29659347 - 29659403
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||  ||||||| ||||||    
T  29659347 aagttataagttgttttcataagttatcttagagagtttatataaataagctgaaaa 29659403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 39602285 - 39602228
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||| ||||||||||||||||| |||||| ||||||| ||||||    
T  39602285 taagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaa 39602228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 1217875 - 1217818
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||| |||||||||| |||||| |||||| || |||||||||||    
T  1217875 taagttataagctgttttcataagctatccttgagaacttatgaaagtaagatgaaaa 1217818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 36646457 - 36646400
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||| ||||||| |||||||||| | ||||| |||| |||||||||||||||    
T  36646457 taagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaa 36646400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 43115051 - 43115108
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| || | ||||| ||||||||||||||||||||| ||||||    
T  43115051 taagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaa 43115108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 21367667 - 21367719
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| |||||||||||| |||| |||||| ||||||| ||||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaa 21367719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 39980729 - 39980781
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||||||||| || |||| |||||| ||||||| ||||||    
T  39980729 tataagttgtttttataagctatattggagaacttatgaaaataagttgaaaa 39980781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 36189710 - 36189781
Alignment:
Q  135 ccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaacaa 206  Q
    |||||||||| || ||||||| ||| |  || ||||||| |||||||||||||||| ||||||| |||||||    
T  36189710 ccataagttcctccaaacagtctcacaagtgcttatactagtaaataagctcaaataagtcaattcaaacaa 36189781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 24158578 - 24158528
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||| ||||| |||||| |||||||||| | |||||||||||||||||||    
T  24158578 taagtaataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 45541648 - 45541722
Alignment:
Q  131 gtttccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaaca 205  Q
    |||| |||||||||||| ||||||| | | |  |||||||||   ||||||||||||||| ||||||||||||||    
T  45541648 gttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatccaaaca 45541722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 49845533 - 49845459
Alignment:
Q  131 gtttccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaaca 205  Q
    ||||||||||| ||| | ||| ||||||| |  | |||||||| ||| |||||||||||| ||||||||||||||    
T  49845533 gtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaaca 49845459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 237392 - 237449
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||||| ||||| |||| |  |||||||| ||||||||| ||||||    
T  237392 taagttataagttgttttcataagttatcctatagagcttacggaaataagctgaaaa 237449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 2318644 - 2318697
Alignment:
Q  74 tataagttgtttttataagcta-tctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||||| || |||| |||||||||| |||||||| ||||||    
T  2318644 tataagttgtttttataagttattcttggagagcttatagaaataagctgaaaa 2318697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 14548796 - 14548739
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| ||||| |||  | ||||||||||||||||||| ||||||    
T  14548796 taagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 14548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 20669172 - 20669217
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||| |||||| |||||||||||| ||||||||||| |||||||    
T  20669172 tataagctgttttcataagctatcttggagagcttatgtaaataag 20669217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 37273141 - 37273186
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||||||||| |||| |||||||||||||| ||||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaa 37273186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 40665424 - 40665481
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||| ||||| |||||| ||||||||||  ||||||| ||||||    
T  40665424 taagttataagatgttttcataagttatcttggagagcttataaaaataagctgaaaa 40665481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 51510263 - 51510218
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||||| ||||| |||| | |||||||||||||||||||    
T  51510263 tataagttgttttcataagttatcgtggagagcttatggaaataag 51510218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 8697657 - 8697705
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatg 122  Q
    |||||| ||||||| ||||||||||  ||||||||| ||||||||||||    
T  8697657 tataagctgtttttctaagctatctaggagagcttaaggaaataagatg 8697705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 9049544 - 9049592
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatg 122  Q
    |||||| ||||||| ||||||||||  ||||||||| ||||||||||||    
T  9049544 tataagctgtttttctaagctatctaggagagcttaaggaaataagatg 9049592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 22203430 - 22203474
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||||||||| |||||||||||| |||| |||||| ||||||    
T  22203430 tataagttgttttcataagctatcttggagaacttatgaaaataa 22203474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 25185985 - 25186037
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||| |||||||||||||||||| || | ||| || ||||||||||||||    
T  25185985 tataagtggtttttataagctatcttggaaatcttgtgaaaataagatgaaaa 25186037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 44295529 - 44295581
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| ||||| ||| |  ||||||||||||||||||| ||||||    
T  44295529 tataagttgttttcataagatatatcggagagcttatggaaataagctgaaaa 44295581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 6988112 - 6988167
Alignment:
Q  71 agttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||| ||||||||||||  |||| |||| |||||||||||||||    
T  6988112 agttataagttgttttcataagctatcttgaagagtttatagaaataagatgaaaa 6988167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 36863700 - 36863650
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  36863700 taagttataaattgttttcataagctatcttggagagcttatgaaaataag 36863650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 43985074 - 43985020
Alignment:
Q  73 ttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||||||||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  43985074 ttataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaat 43985020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 3078709 - 3078665
Alignment:
Q  75 ataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||    
T  3078709 ataagctgtttttataagctatcttggagagcttctggaaataag 3078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 9477947 - 9478003
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||||||||||||||||| |||||||||| | ||||| ||||| ||||||| |||||    
T  9477947 taagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaaa 9478003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 16867739 - 16867791
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||| ||||||    
T  16867739 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaa 16867791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 18840796 - 18840848
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| || ||||||||| | |||| ||||||||||||||||||||||||||    
T  18840796 tataagctggttttataagatgtcttggagagcttatggaaataagatgaaaa 18840848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 6167359 - 6167308
Alignment:
Q  68 ttaagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||| |||||| |||||||||||||||| || |||| ||||||||||||||    
T  6167359 ttaagctataagctgtttttataagctattttggagaacttatggaaataag 6167308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 34652097 - 34652054
Alignment:
Q  83 tttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaa 34652054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 656845 - 656795
Alignment:
Q  76 taagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||| ||| ||||||||||||  |||||||||| ||||||||||||||    
T  656845 taagttgatttcataagctatcttgcagagcttatgaaaataagatgaaaa 656795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 7751516 - 7751486
Alignment:
Q  69 taagttataagttgtttttataagctatctt 99  Q
    |||||||||||||||||||||||||||||||    
T  7751516 taagttataagttgtttttataagctatctt 7751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 11513893 - 11513951
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||| ||||||||||||| |||||||||| | |||| ||| |||||||||| |||||||    
T  11513893 taagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaat 11513951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 15120260 - 15120334
Alignment:
Q  131 gtttccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaaca 205  Q
    ||||||||||| ||| | |||||| |||| | |||||||| || ||| ||||| |||||| ||||||||||||||    
T  15120260 gtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaaca 15120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 28933818 - 28933876
Alignment:
Q  68 ttaagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| ||||||| |||||||||| | ||||||| || |||||||| ||||||    
T  28933818 ttaagttataaattgttttcataagctatcctagagagctgatagaaataagttgaaaa 28933876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 29300640 - 29300690
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    |||||||||||||||||| |||||||||| || |  |||||||||||||||    
T  29300640 taagttataagttgttttcataagctatccttaaatgcttatggaaataag 29300690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 35099673 - 35099627
Alignment:
Q  70 aagttataagttgtttttataagctatctttgagagcttatggaaat 116  Q
    |||||||||| || ||| |||||||||| ||||||||||||||||||    
T  35099673 aagttataagctgctttcataagctatccttgagagcttatggaaat 35099627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 36852479 - 36852525
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||| |||||||||||| ||||||||||||||||||  |||||||    
T  36852479 tgttttcataagctatcttggagagcttatggaaataatctgaaaat 36852525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 1625895 - 1625952
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||||| |||||||||||| |||| |||| | |||| || ||||||    
T  1625895 taagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaa 1625952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 1810660 - 1810716
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||| |||||||||||||||||||||  |||| ||||| ||||||| ||||||    
T  1810660 taagttata-gttgtttttataagctatcttgaagagtttatgaaaataagctgaaaa 1810716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 9174815 - 9174868
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||| |||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  9174815 tataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaat 9174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 14299706 - 14299649
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||| ||||||||| | | ||||||||||| ||||||| |||||||| ||||||    
T  14299706 taagttatgagttgttttcacaggctatctttgacagcttatagaaataagctgaaaa 14299649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 29510592 - 29510629
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatg 111  Q
    |||||||||||||  |||||||||||||||||||||||    
T  29510592 tataagttgttttcctaagctatctttgagagcttatg 29510629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 35379079 - 35379034
Alignment:
Q  81 tgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||||||||| ||||||||||| ||||||| ||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaa 35379034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 35485912 - 35485969
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||||||||||||||||||||| |  ||||| ||||||||| || ||||||    
T  35485912 taagctataagttgtttttataagctatcctgaagagcctatggaaatgagctgaaaa 35485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 40837505 - 40837452
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||| |||||||| |||||||||| |  |||||||||||||||||| |||||||    
T  40837505 tatatgttgttttaataagctatcatgtagagcttatggaaataagctgaaaat 40837452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 11393442 - 11393410
Alignment:
Q  87 tataagctatctttgagagcttatggaaataag 119  Q
    |||||||||||||||||||||||||||| ||||    
T  11393442 tataagctatctttgagagcttatggaagtaag 11393410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 11410103 - 11410071
Alignment:
Q  87 tataagctatctttgagagcttatggaaataag 119  Q
    |||||||||||||||||||||||||||| ||||    
T  11410103 tataagctatctttgagagcttatggaagtaag 11410071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 12215807 - 12215859
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| ||||||||||||| ||| |||||||||||||| |||| | ||||||    
T  12215807 tataagctgtttttataagccatccttgagagcttatgggaatatggtgaaaa 12215859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 18882892 - 18882944
Alignment:
Q  74 tataagttgttttta-taagctatctttgagagcttatggaaataagatgaaa 125  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||| ||||    
T  18882892 tataagttgtttttcgtaagctatttttgagagcttgtggaaataagacgaaa 18882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 20952355 - 20952407
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||||| |||||| || |||| |||||| ||||||| ||||||    
T  20952355 tataagttgtttttattagctatattggagaacttatgaaaataagttgaaaa 20952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 26202028 - 26202080
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||||| ||| || |||| |||||| ||||||| ||||||    
T  26202028 tataagttgtttttataagatatattggagaacttatgaaaataagttgaaaa 26202080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 29316845 - 29316793
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||| || ||||||||| |||| |||||||||||||| ||||||    
T  29316845 tataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaa 29316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 33941904 - 33941960
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||||||||| ||||||| |||||||||||| ||||| |||||  |||||| |||||    
T  33941904 taagttataacttgttttcataagctatcttggagagtttatgataataagttgaaa 33941960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 43279599 - 43279547
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||||||||| || |||| ||| || ||||||| ||||||    
T  43279599 tataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaa 43279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 49938745 - 49938799
Alignment:
Q  72 gttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||||||||||| || |||| |||||| ||||||| ||||||    
T  49938745 gttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaa 49938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 12564949 - 12564892
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| ||||||||||||| || ||||| ||||||||| ||||||    
T  12564949 taagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaa 12564892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 23902142 - 23902085
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||||||||| | |||||||||| |||||||||||||| |||| ||||||    
T  23902142 taagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaa 23902085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 33976681 - 33976738
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||||||||  ||| ||||| | ||||||||||||||||||| ||||||    
T  33976681 taagttataagttgttttcttaacctatcctagagagcttatggaaataagttgaaaa 33976738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 12564569 - 12564517
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||| ||||||    
T  12564569 tataggttgttttcataagctatcttggagaacttatggaaataagctgaaaa 12564517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 25479581 - 25479633
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| |||||||||| | ||||||||||| ||||||| ||||||    
T  25479581 tataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaa 25479633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 27140478 - 27140530
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| ||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaa 27140530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 32548696 - 32548649
Alignment:
Q  79 gttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||| |||||||||||| | ||||||||||||||||| ||||||    
T  32548696 gttgttttcataagctatcttggggagcttatggaaataagttgaaaa 32548649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 3234085 - 3234040
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||||||||||||||| || |||| |||||| |||||||    
T  3234085 tataagttgtttttataagctatattggagaacttatgaaaataag 3234040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 5924055 - 5924100
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataag 119  Q
    ||||||||||||| ||||| |||| | |||||||||||||||||||    
T  5924055 tataagttgttttcataagttatcctagagagcttatggaaataag 5924100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 7137068 - 7137015
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaat 127  Q
    |||||| |||||| |||||||||||| |||| |||||| ||||||| |||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaat 7137015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 35590967 - 35590910
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| ||||||| | ||| |||||||||| | ||||||||||||||||||| ||||||    
T  35590967 taagctataagtcgatttcataagctatcatggagagcttatggaaataagctgaaaa 35590910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 5421995 - 5421955
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagctta 109  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  5421995 taagctataagttgttttgataagctatcttagagagctta 5421955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 7472311 - 7472363
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||| |||||  |||||||||||| ||||||||||| ||||||| ||||||    
T  7472311 tataagctgtttccataagctatcttggagagcttatgaaaataagctgaaaa 7472363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 23402043 - 23402083
Alignment:
Q  86 ttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  23402043 ttataagctatcatcgagagcttatggaaataagctgaaaa 23402083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 26779995 - 26779943
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||||| ||||||||||||  ||| |||||| ||||||| ||||||    
T  26779995 tataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaa 26779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 28689529 - 28689470
Alignment:
Q  69 taagttataagttgtttt--tataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||| |||||||||||||  ||||||||||||| || |||||||| ||||||| ||||||    
T  28689529 taagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaa 28689470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 31294591 - 31294539
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||| ||| ||||| | ||||||||||| ||||||| ||||||    
T  31294591 tataagttgtttttgtaaactatcatagagagcttatgaaaataagttgaaaa 31294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 38503535 - 38503483
Alignment:
Q  74 tataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    |||||||||||||| | ||||||||| |||| |||||| ||||||| ||||||    
T  38503535 tataagttgtttttgttagctatcttggagaacttatgaaaataagctgaaaa 38503483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 39596592 - 39596648
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaa 125  Q
    |||| |||||| || |||||||||||||||| ||||||||||  ||||||| |||||    
T  39596592 taagctataagatggttttataagctatcttggagagcttataaaaataagttgaaa 39596648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 20203 - 20245
Alignment:
Q  76 taagttgtttttataagctatctttgagagcttatggaaataa 118  Q
    ||||||||||||||||||| |||| |||||| |||||||||||    
T  20203 taagttgtttttataagctgtcttcgagagcatatggaaataa 20245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 159966 - 159892
Alignment:
Q  131 gtttccataagttcttcaaaacagtttcaaagctgtttatacttgtaaataagctcaaatcagtcaatccaaaca 205  Q
    |||||||| |||||| ||||| ||||||| |  |||||||| | ||| |||||||||||| || |||||||||||    
T  159966 gtttccattagttctccaaaatagtttcacaagtgtttatattagtagataagctcaaataagccaatccaaaca 159892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 160048 - 159991
Alignment:
Q  69 taagttataagttgtttttataagctatctttgagagcttatggaaataagatgaaaa 126  Q
    ||||||||||| |||||| |||||||||| |  ||||||| |||||||||| ||||||    
T  160048 taagttataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaa 159991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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