View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18924_low_17 (Length: 252)

Name: NF18924_low_17
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18924_low_17
NF18924_low_17
[»] chr2 (6 HSPs)
chr2 (113-252)||(11108787-11108926)
chr2 (26-80)||(11108959-11109013)
chr2 (218-252)||(7900259-7900293)
chr2 (212-252)||(3963405-3963445)
chr2 (219-252)||(18906924-18906957)
chr2 (219-252)||(39060406-39060439)
[»] chr1 (4 HSPs)
chr1 (209-252)||(14556393-14556436)
chr1 (212-252)||(36302808-36302848)
chr1 (209-252)||(2937157-2937200)
chr1 (216-252)||(29721466-29721502)
[»] chr6 (2 HSPs)
chr6 (216-252)||(17204242-17204278)
chr6 (215-252)||(6390293-6390330)
[»] chr3 (2 HSPs)
chr3 (216-252)||(19987832-19987868)
chr3 (210-252)||(33092025-33092067)
[»] scaffold0015 (1 HSPs)
scaffold0015 (217-252)||(50096-50131)
[»] chr4 (4 HSPs)
chr4 (217-252)||(10616580-10616615)
chr4 (217-252)||(32384284-32384319)
chr4 (214-250)||(5340195-5340231)
chr4 (220-252)||(5814155-5814187)
[»] chr7 (2 HSPs)
chr7 (218-252)||(21276644-21276678)
chr7 (218-252)||(44141408-44141442)
[»] chr5 (2 HSPs)
chr5 (218-252)||(974206-974240)
chr5 (211-252)||(4717193-4717234)
[»] chr8 (1 HSPs)
chr8 (219-252)||(9855687-9855720)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 11108926 - 11108787
Alignment:
Q  113 ttaagggcagtaaaattaaacaaccgagagaaattagtaaggtatccctcacaaggtcaattcctcttagaaattggttgatccccatatgcttagaaaa 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11108926 ttaagggcagtaaaattaaacaaccgggagaaattagtaaggtatccctcacaaggtcaattcctcttagaaattagttgatccccatatgcttagaaaa 11108827  T
Q  213 aataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11108826 aataaaggcttaaatatatctttagtccctgcactttcat 11108787  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 11109013 - 11108959
Alignment:
Q  26 gttggtatatatagtgtatataccaattgcatagaggaaaaatcatcttgaacat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11109013 gttggtatatatagtgtatataccaattgcatagaggaaaaatcatcttgaacat 11108959  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 7900259 - 7900293
Alignment:
Q  218 aggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||||||||||||||||||||||||||    
T  7900259 aggcttaaatatatctttagtccctgcactttcat 7900293  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 3963445 - 3963405
Alignment:
Q  212 aaataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  3963445 aaattaaggcttaaatatgtctttagtccctgcactttcat 3963405  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 18906924 - 18906957
Alignment:
Q  219 ggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||| ||||||||||||||||||||||    
T  18906924 ggcttaaatatgtctttagtccctgcactttcat 18906957  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 39060406 - 39060439
Alignment:
Q  219 ggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||| ||||||||||||||||||||||    
T  39060406 ggcttaaatatgtctttagtccctgcactttcat 39060439  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 14556436 - 14556393
Alignment:
Q  209 aaaaaataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  14556436 aaaaaatataggcttaaatatatctttagtccctgcactttcat 14556393  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 36302848 - 36302808
Alignment:
Q  212 aaataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  36302848 aaataaaggcttaaatatgcctttagtccctgcactttcat 36302808  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 2937200 - 2937157
Alignment:
Q  209 aaaaaataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||| |||||||| |||||||||| |||||||||||    
T  2937200 aaaaaataaaggtttaaatatgtctttagtccttgcactttcat 2937157  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 29721502 - 29721466
Alignment:
Q  216 aaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  29721502 aaaggcttaaatatgtctctagtccctgcactttcat 29721466  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 17204278 - 17204242
Alignment:
Q  216 aaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  17204278 aaaggcttaaatatatctttagtccctgcactttcat 17204242  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 6390330 - 6390293
Alignment:
Q  215 taaaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  6390330 taaaggcttaaatatgtctttagtccctgcactttcat 6390293  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 19987832 - 19987868
Alignment:
Q  216 aaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19987832 aaaggcttaaatatgtctttagtccctgcactttcat 19987868  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 33092025 - 33092067
Alignment:
Q  210 aaaaataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||| |||||||| |||||||||| |||||||||||    
T  33092025 aaaaataaaggtttaaatatgtctttagtccttgcactttcat 33092067  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 50131 - 50096
Alignment:
Q  217 aaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||||| ||||||||||||||||||||||    
T  50131 aaggcttaaatatgtctttagtccctgcactttcat 50096  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 10616615 - 10616580
Alignment:
Q  217 aaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10616615 aaggcttaaatatgtctttagtccctgcactttcat 10616580  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 32384319 - 32384284
Alignment:
Q  217 aaggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32384319 aaggcttaaatatgtctttagtccctgcactttcat 32384284  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 5340231 - 5340195
Alignment:
Q  214 ataaaggcttaaatatatctttagtccctgcactttc 250  Q
    |||||||||||||||| | ||||||||||||||||||    
T  5340231 ataaaggcttaaatatgtgtttagtccctgcactttc 5340195  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 5814187 - 5814155
Alignment:
Q  220 gcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||| ||||||||||||||||||||||    
T  5814187 gcttaaatatgtctttagtccctgcactttcat 5814155  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 21276678 - 21276644
Alignment:
Q  218 aggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||| ||||||||||||||||||||||    
T  21276678 aggcttaaatatgtctttagtccctgcactttcat 21276644  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 44141408 - 44141442
Alignment:
Q  218 aggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||| ||||||||||||||||||||||    
T  44141408 aggcttaaatatgtctttagtccctgcactttcat 44141442  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 974240 - 974206
Alignment:
Q  218 aggcttaaatatatctttagtccctgcactttcat 252  Q
    |||||||||||| ||||||||||||||||||||||    
T  974240 aggcttaaatatgtctttagtccctgcactttcat 974206  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 4717234 - 4717193
Alignment:
Q  211 aaaataaaggcttaaatatatctttagtccctgcactttcat 252  Q
    |||| ||||||||||||||  |||||||||||||||||||||    
T  4717234 aaaaaaaaggcttaaatatgcctttagtccctgcactttcat 4717193  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 9855720 - 9855687
Alignment:
Q  219 ggcttaaatatatctttagtccctgcactttcat 252  Q
    ||||||||||| ||||||||||||||||||||||    
T  9855720 ggcttaaatatgtctttagtccctgcactttcat 9855687  T

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