View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18924_low_2 (Length: 575)

Name: NF18924_low_2
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18924_low_2
NF18924_low_2
[»] chr3 (3 HSPs)
chr3 (11-560)||(8259326-8259876)
chr3 (35-136)||(10849476-10849577)
chr3 (278-354)||(22897733-22897809)
[»] chr2 (7 HSPs)
chr2 (260-554)||(12092324-12092618)
chr2 (13-98)||(27345778-27345863)
chr2 (15-98)||(23928358-23928441)
chr2 (15-97)||(29567008-29567090)
chr2 (15-97)||(19027186-19027268)
chr2 (260-385)||(23928075-23928200)
chr2 (24-144)||(12092731-12092851)
[»] chr8 (4 HSPs)
chr8 (249-480)||(22378339-22378570)
chr8 (249-480)||(22384514-22384745)
chr8 (24-493)||(15270238-15270705)
chr8 (15-97)||(22619373-22619455)
[»] scaffold0483 (2 HSPs)
scaffold0483 (260-369)||(7608-7717)
scaffold0483 (15-97)||(7878-7960)
[»] scaffold1272 (1 HSPs)
scaffold1272 (260-354)||(1240-1334)
[»] scaffold0034 (2 HSPs)
scaffold0034 (15-97)||(26260-26342)
scaffold0034 (260-381)||(26503-26624)
[»] chr4 (5 HSPs)
chr4 (15-97)||(10270078-10270160)
chr4 (22-97)||(16288022-16288097)
chr4 (15-98)||(18278000-18278083)
chr4 (16-97)||(21335991-21336072)
chr4 (16-85)||(15311649-15311718)
[»] scaffold0008 (1 HSPs)
scaffold0008 (15-98)||(251944-252027)
[»] scaffold0039 (1 HSPs)
scaffold0039 (15-144)||(114082-114208)
[»] chr6 (3 HSPs)
chr6 (302-387)||(18734290-18734375)
chr6 (13-97)||(18734577-18734661)
chr6 (13-97)||(19861576-19861660)
[»] chr5 (4 HSPs)
chr5 (15-98)||(23491026-23491109)
chr5 (302-385)||(42790794-42790877)
chr5 (260-345)||(23490781-23490866)
chr5 (13-97)||(42791091-42791175)
[»] chr1 (3 HSPs)
chr1 (15-98)||(24975326-24975409)
chr1 (20-142)||(23934985-23935107)
chr1 (260-369)||(24975569-24975678)
[»] scaffold0063 (1 HSPs)
scaffold0063 (15-97)||(38253-38335)
[»] chr7 (2 HSPs)
chr7 (15-97)||(18184205-18184287)
chr7 (308-369)||(18159622-18159683)


Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Complemental strand, 8259876 - 8259326
Alignment:
Q  11 cacagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaa 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  8259876 cacagacagcctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggaaagcctgcccgtgaa 8259777  T
Q  111 ggcgagggacccgtcggtcgcttcacggaatacatgtccttggcgttgtccagggnnnnnnn-tcctagcttagattgcaattgccgatctgaaagaagt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||||    
T  8259776 ggcgagggacccgtcggtcgcttcacggaatacatgtccttggcgttgtccagggaaaaaaaatcctagcttagattgcaattaccgatctgaaagaagt 8259677  T
Q  210 tgggatcaaacccgccaaaaactcctactcaggaaaataagggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatga 309  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8259676 tgggatcaaacccgccaaaaactcctactcaagaaaataagggaaccgataaaacaaagtattgccgattccacaagtgtcatagacacttgactgatga 8259577  T
Q  310 ctgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcctgagaagcagaccgtcaaatta 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8259576 ctgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcctgagaagcagaccgtcaaatta 8259477  T
Q  410 atcaccgacaagaaaaataaggacatagtggtcgctatgtccgtagagcagctggatgaattcctggagcatgtggatataactccatattcatgtacat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8259476 atcaccgacaagaaaaataaggacatagtggtcgctatgtccgtagagcagctggatgaattcgtggagcatgtggatataactccatattcatgtacat 8259377  T
Q  510 gggaaccgtttcctacggccaacgtcatcactggtgggatatcaaacttct 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8259376 gggaaccgtttcctacggccaacgtcatcactggtgggatatcaaacttct 8259326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 10849476 - 10849577
Alignment:
Q  35 gaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgagggacccgtcggtcgcttc 134  Q
    |||||| |||| ||||| |||||| || | |||||| ||||| ||||||||||||| ||||||  || ||| ||||||| | || || | ||||||||||    
T  10849476 gaaggaggaacttgcttctgaatcctctagaaagcccttccatgagaaaaagaagggaggcaaagctccccttgaaggcaaagggccaggcggtcgcttc 10849575  T
Q  135 ac 136  Q
    ||    
T  10849576 ac 10849577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 22897809 - 22897733
Alignment:
Q  278 ttccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgagg 354  Q
    ||||||||||||||| |||||   | ||| || ||||| || || |||||| | |||||||||||||||||||||||    
T  22897809 ttccacaagtgtcatggacacacaaatgacgagtgcattcacctcaaggatgctattgaaatcctcatacaacgagg 22897733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 260 - 554
Target Start/End: Complemental strand, 12092618 - 12092324
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 359  Q
    |||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||| || | ||||||||| ||||||||| ||||||||    
T  12092618 aaaacaaaatattgtcggttccacaagtgtcacggacacttgactgatgactgcatccatttgaagaatgcaattgaaatcgtcatacaacaaggtcggc 12092519  T
Q  360 tcaatcagttgaccaagaaccccgagcctgagaagcagaccgtcaaattaatcaccgacaagaaaaataaggacatagtggtcgctatgtccgtagagca 459  Q
    |||| ||||| ||||||||| | ||||  |||||  |||| ||| | || |||||||| | |||  |||||||  ||||||| ||||||||||| |||||    
T  12092518 tcaagcagttcaccaagaactctgagctagagaaatagactgtcgacttgatcaccgataggaagcataaggatgtagtggttgctatgtccgtggagca 12092419  T
Q  460 gctggatgaattcctggagcatgtggatataactccatattcatgtacatgggaaccgtttcctacggccaacgtcatcactggtgggatatcaa 554  Q
    ||| ||||||||||   |||| ||||| |||||||||||| | |  || |||||||  |||||||| ||||||||||||||||||||||||||||    
T  12092418 gctagatgaattcccatagcacgtggaaataactccatatgcgttcacttgggaacaatttcctactgccaacgtcatcactggtgggatatcaa 12092324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 27345863 - 27345778
Alignment:
Q  13 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 98  Q
    |||||| ||||||||||||||||||||| || | ||||  ||| || ||||||||||| ||||| |||||||||||||||||||||    
T  27345863 cagacagcctcaacaaatccaggaaggaggagcctgctgctgagtcctccaaaaagcccttccacgagaaaaagaaggaaggcaag 27345778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 23928441 - 23928358
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 98  Q
    |||| ||||||||||||||||||||| || | ||||  |||||| ||||||||||| ||||| |||||||||| ||||||||||    
T  23928441 gacagcctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgagaaaaagagggaaggcaag 23928358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 29567090 - 29567008
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||| ||||||||||||||||||||| |||| ||||  |||||| |||||||| || ||||| |||||||||| |||||||||    
T  29567090 gacagcctcaacaaatccaggaaggaggaacctgctgctgaatcctccaaaaatcccttccatgagaaaaagagggaaggcaa 29567008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 19027268 - 19027186
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    ||||||||||||||  ||| ||| || |||  ||||  |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  19027268 gacaacctcaacaaggccaagaatgaggaaactgctgctgaatcctccaaaaagcccttccacgagaaaaagaaggaaggcaa 19027186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 385
Target Start/End: Complemental strand, 23928200 - 23928075
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 359  Q
    |||||||| |||||||  |||||||||| |||  | ||| | | |||||||||||||||  |||||||| |||||||| || |||| |||||||| || |    
T  23928200 aaaacaaaatattgtcagttccacaagtttcacgggcacgtcattgatgactgcatccacttgaaggatgccattgaactcttcatccaacgaggacgac 23928101  T
Q  360 tcaatcagttgaccaagaaccccgag 385  Q
    |||| || || | ||||| |||||||    
T  23928100 tcaaacaattcatcaagacccccgag 23928075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 12092851 - 12092731
Alignment:
Q  24 aacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgagggacccg 123  Q
    |||||| ||||||||||||||| | |   |||||||||||||||  | ||| ||||||||||||||||||| || | |||   |||| || | ||||||     
T  12092851 aacaaaaccaggaaggaagaacctaccgctgaatcttccaaaaaatccttctaagagaaaaagaaggaaggaaaacatgcatgtgaaagcaaaggaccca 12092752  T
Q  124 tcggtcgcttcacggaataca 144  Q
    || |||||||||| |||||||    
T  12092751 tccgtcgcttcaccgaataca 12092731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 249 - 480
Target Start/End: Complemental strand, 22378570 - 22378339
Alignment:
Q  249 agggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcataca 348  Q
    |||| ||||| |||||||| ||| |||| |||||||||||| | ||||| |||| | | || || ||||||||||||||| | |||||||||||||||||    
T  22378570 aggggaccgacaaaacaaaatatcgtcggttccacaagtgttagagacatttgattaacgattgtatccatctgaaggatgcaattgaaatcctcataca 22378471  T
Q  349 acgaggtcggctcaatcagttgaccaagaaccccgagcctgagaagcagaccgtcaaattaatcaccgacaagaaaaataaggacatagtggtcgctatg 448  Q
    ||||| ||| ||||| ||||| ||||||||| |||| ||  ||||||||||| |||||||||||||||||| |||||||||||||  | | |||||||||    
T  22378470 acgagatcgactcaagcagttcaccaagaactccgaaccgaagaagcagaccttcaaattaatcaccgacaggaaaaataaggacgcaattgtcgctatg 22378371  T
Q  449 tccgtagagcagctggatgaattcctggagca 480  Q
    ||||| ||| |||| |||||||||| ||||||    
T  22378370 tccgtggagaagctagatgaattcccggagca 22378339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 249 - 480
Target Start/End: Complemental strand, 22384745 - 22384514
Alignment:
Q  249 agggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcataca 348  Q
    |||| ||||| |||||||| ||| |||| |||||||||||| | ||||| |||| | | || || ||||||||||||||| | |||||||||||||||||    
T  22384745 aggggaccgacaaaacaaaatatcgtcggttccacaagtgttagagacatttgattaacgattgtatccatctgaaggatgcaattgaaatcctcataca 22384646  T
Q  349 acgaggtcggctcaatcagttgaccaagaaccccgagcctgagaagcagaccgtcaaattaatcaccgacaagaaaaataaggacatagtggtcgctatg 448  Q
    ||||| ||| ||||| ||||| ||||||||| |||| ||  ||||||||||| |||||||||||||||||| |||||||||||||  | | |||||||||    
T  22384645 acgagatcgactcaagcagttcaccaagaactccgaaccgaagaagcagaccttcaaattaatcaccgacaggaaaaataaggacgcaattgtcgctatg 22384546  T
Q  449 tccgtagagcagctggatgaattcctggagca 480  Q
    ||||| ||| |||| |||||||||| ||||||    
T  22384545 tccgtggagaagctagatgaattcccggagca 22384514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 493
Target Start/End: Complemental strand, 15270705 - 15270238
Alignment:
Q  24 aacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgagggacccg 123  Q
    ||||||||||  |||||||| |||| |  |||||||||||||| ||  ||||||||||| |||||||||||||  |||||||  |||||  |  |||  |    
T  15270705 aacaaatccaataaggaagatcatgttggtgaatcttccaaaatgctcttccaagagaagaagaaggaaggcattcctgcccgggaaggaaaaagacttg 15270606  T
Q  124 tcggtcgcttcacggaatacatgtccttggcgttgtccagggnnnnnnntcctagcttagattgcaattgccgatctgaaagaagttgggatcaaacccg 223  Q
    |||||||||||||||| ||||   |||||||| ||||||| |       |||||||| |||| ||||||||| ||   ||||| | |||| |||||||      
T  15270605 tcggtcgcttcacggagtacacacccttggcgatgtccagtgataaaa-tcctagctgagatcgcaattgccaattcaaaagaggctggg-tcaaacca- 15270509  T
Q  224 ccaaaaactcctactcaggaaaataagggaaccgataaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatc-tg 322  Q
    |||||  ||||  ||||||| || ||||||||| ||||||||||||||  ||| |||||||||||||| | |||||||| | | || |||||||||| ||    
T  15270508 ccaaaggctccctctcaggagaagaagggaaccaataaaacaaagtatattcggttccacaagtgtcacatacacttgaatcacgattgcatccatcctg 15270409  T
Q  323 aaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcctgagaagcagaccgtcaaattaatcaccgacaaga 422  Q
    |||||| ||||| ||||||||||||||| ||| || ||||| |||||  |||||||| | |||||  ||||||| || ||| || |||||||||||   |    
T  15270408 aaggatgccatttaaatcctcatacaacaaggccgactcaagcagtttgccaagaactcagagccgaagaagcaaactgtcgaactaatcaccgacggaa 15270309  T
Q  423 aaaataaggacatagtggtcgctatgtccgtagagcagctggatgaattcctggagcatgtggatataact 493  Q
    | ||||||||| | || |||| ||||||| |||| ||||| |||||||| | |||||||||||| ||||||    
T  15270308 agaataaggacgtggtagtcgttatgtccatagaacagctagatgaatttccggagcatgtggaaataact 15270238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 22619373 - 22619455
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||||||||||||||||||||||| || | ||||  |||||  ||||||||||| ||||| ||||||||||||||||||||    
T  22619373 gacaacctcaacaaatccaggaaggaggagcctgctgctgaattctccaaaaagcccttccatgagaaaaagaaggaaggcaa 22619455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 7717 - 7608
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 359  Q
    |||||||| |||||||||||||||||||||||  | ||| | ||||| || |||||||||||||||||| ||||| || ||||||| |||||||| || |    
T  7717 aaaacaaaatattgtcgattccacaagtgtcacggtcacgtcactgacgattgcatccatctgaaggattccatttaactcctcatccaacgaggacgcc 7618  T
Q  360 tcaatcagtt 369  Q
    |||| |||||    
T  7617 tcaaacagtt 7608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 7960 - 7878
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    ||||||||||||||||| |||||||| || | ||||| |||||| ||||||| ||| ||||| ||||||||||||||||||||    
T  7960 gacaacctcaacaaatctaggaaggaggagcctgcttctgaatcctccaaaacgcccttccatgagaaaaagaaggaaggcaa 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1272 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 1334 - 1240
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgagg 354  Q
    |||||||| |||||||||||||||||||||||  | ||| | ||||| || |||||||||||||||||| ||||| || ||||||| ||||||||    
T  1334 aaaacaaaatattgtcgattccacaagtgtcacggtcacgtcactgacgattgcatccatctgaaggattccatttaactcctcatccaacgagg 1240  T

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Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 26260 - 26342
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||||||||||||||||||||||| || | ||||  |||||| |||||||| || ||||| |||||||||| |||||||||    
T  26260 gacaacctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaatcccttccatgagaaaaagagggaaggcaa 26342  T

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Target: scaffold0034; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 381
Target Start/End: Original strand, 26503 - 26624
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 359  Q
    |||||||| |||||||||||||||||||| ||  | ||| | || || |||||||||||||| |||||| | |||||  ||||||| |||||||| || |    
T  26503 aaaacaaaatattgtcgattccacaagtgccacgggcacgtcaccgacgactgcatccatctaaaggatgctattgagctcctcatccaacgaggacgcc 26602  T
Q  360 tcaatcagttgaccaagaaccc 381  Q
    |||| ||||| | |||||||||    
T  26603 tcaaacagttcatcaagaaccc 26624  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 10270078 - 10270160
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||||||||||||| ||||||||| || | ||||  |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  10270078 gacaacctcaacaaattcaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgagaaaaagagggaaggcaa 10270160  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 16288097 - 16288022
Alignment:
Q  22 tcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||||  |||||||||| || | ||||| |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  16288097 tcaacaaggccaggaaggaggagcctgcttctgaatcctccaaaaagcccttccatgagaaaaagagggaaggcaa 16288022  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 18278000 - 18278083
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 98  Q
    ||||||||| | |||||||||| ||| || | ||||  ||| || ||||||||||| ||||| |||||||||||||||||||||    
T  18278000 gacaacctccataaatccaggacggaggagcctgctgctgagtcctccaaaaagcccttccacgagaaaaagaaggaaggcaag 18278083  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 21335991 - 21336072
Alignment:
Q  16 acaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||||||| |||||||||||| | || | ||||  | |||| ||||||||||| ||||| |||||||||| |||||||||    
T  21335991 acaacctcaaaaaatccaggaagaaggagcctgctgctaaatcctccaaaaagcccttccatgagaaaaagagggaaggcaa 21336072  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 15311718 - 15311649
Alignment:
Q  16 acaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaa 85  Q
    |||||||||||||||| |||||||| || ||| |   |||||| ||||||||||| ||||| ||||||||    
T  15311718 acaacctcaacaaatctaggaaggatgatcataccgctgaatcctccaaaaagcccttccatgagaaaaa 15311649  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 252027 - 251944
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 98  Q
    |||| ||||||||||||||||||||| || | ||||  |||||| ||||||||||| ||||| |||||||| | ||||||||||    
T  252027 gacagcctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgagaaaaaaagggaaggcaag 251944  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 114082 - 114208
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcg 114  Q
    |||||||| ||||||  ||||||||||||   || |  |||||||||||||||||| |||||  |||||||  |||||| ||||||||||||||||||      
T  114082 gacaacctaaacaaaaacaggaaggaagagtctgttgctgaatcttccaaaaagccgttccattagaaaaa--aggaag-caagcctgcccatgaaggaa 114178  T
Q  115 agggacccgtcggtcgcttcacggaataca 144  Q
    | |||||||| ||||||| ||| |||||||    
T  114179 aaggacccgttggtcgctacacagaataca 114208  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 18734375 - 18734290
Alignment:
Q  302 actgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgagcc 387  Q
    ||||| ||||||||||| ||  ||||| |||||||| ||||||| |||||||| |||||||| ||||| | |||||||||| ||||    
T  18734375 actgacgactgcatccacctagaggatgccattgaactcctcattcaacgaggacggctcaagcagttcatcaagaaccccaagcc 18734290  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 18734661 - 18734577
Alignment:
Q  13 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||| ||||||||||||||||||||| || | |||| ||||||| | |||||| || ||||| || ||||||| |||||||||    
T  18734661 cagacagcctcaacaaatccaggaaggaggagcctgctgttgaatccttcaaaaatcccttccatgacaaaaagagggaaggcaa 18734577  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 19861576 - 19861660
Alignment:
Q  13 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    ||||||||||||||||||||| |||||| || | ||||  |||||| ||||||||||  |||||  ||||||||| |||||||||    
T  19861576 cagacaacctcaacaaatccaagaaggaggagcctgctgctgaatcctccaaaaagctcttccattagaaaaagagggaaggcaa 19861660  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 23491109 - 23491026
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 98  Q
    ||||||||||||||||| |||||||| || | | ||  ||| || ||||||||||| ||||| ||||| |||||||||||||||    
T  23491109 gacaacctcaacaaatctaggaaggaggagcctactgctgagtcctccaaaaagcccttccacgagaagaagaaggaaggcaag 23491026  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 42790877 - 42790794
Alignment:
Q  302 actgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagttgaccaagaaccccgag 385  Q
    ||||| ||||||||||| ||||||||  |||| ||| ||||||| ||||||||  | ||||| ||||| | |||||||||||||    
T  42790877 actgacgactgcatccacctgaaggacgccatcgaactcctcatccaacgaggatgactcaagcagttcatcaagaaccccgag 42790794  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 23490866 - 23490781
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcat 345  Q
    |||||||| || |||||||||||||| || ||| |||||   ||||| ||||||||||||||||| ||| | |||||  |||||||    
T  23490866 aaaacaaaatactgtcgattccacaaatgccatggacacaccactgacgactgcatccatctgaaagatgctattgagctcctcat 23490781  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 42791175 - 42791091
Alignment:
Q  13 cagacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||| ||||||||||||||| ||||| || | |||   |||||| |||||||| || ||||| ||||| |||| |||||||||    
T  42791175 cagacagcctcaacaaatccagaaaggaggagcctgccgctgaatcctccaaaaatcccttccatgagaagaagagggaaggcaa 42791091  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 24975326 - 24975409
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaag 98  Q
    ||||||||||||||||||||||| || || | ||||  ||| || |||||||| || ||||| ||||| |||||||||||||||    
T  24975326 gacaacctcaacaaatccaggaaagaggagcctgctgctgagtcctccaaaaaacccttccacgagaagaagaaggaaggcaag 24975409  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 23934985 - 23935107
Alignment:
Q  20 cctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaagcctgcccatgaaggcgaggga 119  Q
    |||||||||| |||||||||| || | ||||  |||||| ||||||||||| ||| | || || || |||||||| || ||||| | ||||||| | |||    
T  23934985 cctcaacaaacccaggaaggaggagcctgctgctgaatcctccaaaaagcccttctatgacaagaaaaaggaaggaaaacctgctcgtgaaggcaaagga 23935084  T
Q  120 cccgtcggtcgcttcacggaata 142  Q
    | ||| |||||||||| ||||||    
T  23935085 ctcgttggtcgcttcatggaata 23935107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 24975569 - 24975678
Alignment:
Q  260 aaaacaaagtattgtcgattccacaagtgtcatagacacttgactgatgactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggc 359  Q
    |||||||| ||||||||||||||||| || ||| |||||   ||||| |||||||||||| |||| |||   |||||  ||||||| ||| |||| || |    
T  24975569 aaaacaaaatattgtcgattccacaaatgccatggacacaccactgacgactgcatccatatgaaagatgttattgagctcctcattcaaagaggacgac 24975668  T
Q  360 tcaatcagtt 369  Q
    |||| |||||    
T  24975669 tcaaacagtt 24975678  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 38253 - 38335
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||||||| ||||||||||| ||||| || | ||||  |||||| |||||||| || ||||| ||||||||| ||||||||||    
T  38253 gacaaccttaacaaatccagtaaggaggagcctgctcatgaatcctccaaaaatcccttccatgagaaaaagtaggaaggcaa 38335  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 18184287 - 18184205
Alignment:
Q  15 gacaacctcaacaaatccaggaaggaagaacatgcttttgaatcttccaaaaagccattccaagagaaaaagaaggaaggcaa 97  Q
    |||| |||||||||||||| |||||| || | ||||  |||||| ||||||||| | || || ||||||||||||||||||||    
T  18184287 gacatcctcaacaaatccaagaaggaggagcctgctgctgaatcctccaaaaagaccttgcatgagaaaaagaaggaaggcaa 18184205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 18159683 - 18159622
Alignment:
Q  308 gactgcatccatctgaaggataccattgaaatcctcatacaacgaggtcggctcaatcagtt 369  Q
    ||||||||||||||||||||| | |||||  ||||||| ||| ||||||| ||||| |||||    
T  18159683 gactgcatccatctgaaggatgctattgagctcctcatccaaagaggtcgactcaaacagtt 18159622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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