View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18924_low_20 (Length: 243)
Name: NF18924_low_20
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18924_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 38056590 - 38056804
Alignment:
| Q |
1 |
tcagctcctgcatatgtacatcatcatcatgtccacaatcacatgtcaattattagctctttaaagcaaaataacaatgtccactcacaatgaacaatat |
100 |
Q |
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|||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056590 |
tcagctcctggatatgaacatcatcatcatggccacaatcaca---caattattagctctttaaagcaaaataacaatgtccactcacaatgaacaatat |
38056686 |
T |
|
| Q |
101 |
gttgtt----acctaacccaatcaaaaactaaatcacaagtgatttgatttggttacaattaagtttataaaaatttattttttatttgaa-taaagttg |
195 |
Q |
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|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||| |
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| T |
38056687 |
gttgttactaacctaacccaataaaaaactaaaccacaagtgatttgatttggttacaattaagttaaaagaaatttattttttatttgaattaaagttg |
38056786 |
T |
|
| Q |
196 |
aaaacaactcacgcccac |
213 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
38056787 |
aaaacaactcacacccac |
38056804 |
T |
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