View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18924_low_3 (Length: 566)

Name: NF18924_low_3
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18924_low_3
NF18924_low_3
[»] chr5 (2 HSPs)
chr5 (12-397)||(27313578-27313945)
chr5 (457-550)||(27313353-27313446)
[»] chr7 (2 HSPs)
chr7 (20-89)||(11827948-11828017)
chr7 (92-144)||(31611487-31611539)
[»] chr8 (2 HSPs)
chr8 (19-89)||(43516134-43516204)
chr8 (152-195)||(11222642-11222685)
[»] chr6 (1 HSPs)
chr6 (12-50)||(28064690-28064728)
[»] chr1 (1 HSPs)
chr1 (19-89)||(30435617-30435687)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 27313945 - 27313578
Alignment:
Q  12 agagaatatatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgcctt 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27313945 agagaatatatatataaaacctaataaactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgcttt 27313846  T
Q  112 ttatctaatgtttcatcttaattgatcatatacnnnnnnngcttcaaatataactccacctattcctcaacatgcattttcatttcaagacaacaacgag 211  Q
    | |||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||    
T  27313845 tcatctaatgtttcatcttaattgatcatatactttttttgcttcaaatataactccacctatccctcaacatacattttcatttcaagacaacaatgag 27313746  T
Q  212 atccattaagttacatatggtggtgcctcagttaatcttattccaagagttatgttcaaaaagctagggaaagatgagatagatataatgcaaatcaata 311  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  27313745 atccattgagttacatatggtggtgcctcagtcaatcttattccatgagttatgttcaaaaagctagggaaagatgagatagatataatgcaaaccaat- 27313647  T
Q  312 cgacagtaactagttttaatgtgaaattatctccctcaaatagagttgtgatgttgaatttag-aagtaggaactttgaatagagtt 397  Q
                      |||||||||  ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27313646 ------------------atgtgaaatactctccttcaaatagagttgtgatgttgaatttagaaagtaggaactttgaatagagtt 27313578  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 457 - 550
Target Start/End: Complemental strand, 27313446 - 27313353
Alignment:
Q  457 aatccatatctatttaggagatgaaccatagcaaaagtgatccaatcattaataaggaaaaaactttggatctccaaaatactaatgaagtaac 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27313446 aatccatatctatttaggagatgaaccatagcaaaagtgatccaatcattaataaggaaaaaactttggatctccaaaatgctaatgaagtaac 27313353  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 11827948 - 11828017
Alignment:
Q  20 tatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca 89  Q
    ||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||| ||||    
T  11827948 tatatataaaacctaattgactctaaactaataggcctaatagcatagcccattactttattatctaaca 11828017  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 31611487 - 31611539
Alignment:
Q  92 gattaggtttcaatcgccttttatctaatgtttcatcttaattgatcatatac 144  Q
    |||||||||||||| |  ||| ||| |||||||||||||||| ||||||||||    
T  31611487 gattaggtttcaatagtttttcatcaaatgtttcatcttaatcgatcatatac 31611539  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43516204 - 43516134
Alignment:
Q  19 atatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca 89  Q
    |||||||||||||||||| ||||||||||||| |||  |  ||||||||||||||| ||||||||| ||||    
T  43516204 atatatataaaacctaatggactctaaactaacaggaccaatagcatagcccattattttattatcaaaca 43516134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 11222642 - 11222685
Alignment:
Q  152 gcttcaaatataactccacctattcctcaacatgcattttcatt 195  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11222642 gcttcaaatataacttcacctattcctcaacatacatcttcatt 11222685  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 28064690 - 28064728
Alignment:
Q  12 agagaatatatatataaaacctaatagactctaaactaa 50  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  28064690 agagaatataaatataaaacctaatggactctaaactaa 28064728  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30435687 - 30435617
Alignment:
Q  19 atatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca 89  Q
    ||||||||||||||||||  |||||||||  | |||| |  ||||||||| ||||||||||||||| ||||    
T  30435687 atatatataaaacctaatgaactctaaaccgacaggcccaatagcatagctcattactttattatctaaca 30435617  T

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