View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18924_low_4 (Length: 560)
Name: NF18924_low_4
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18924_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 4 - 533
Target Start/End: Complemental strand, 7928323 - 7927793
Alignment:
| Q |
4 |
atgtcgaagaatattgaaaacagcttatgaaaatgtcaaactattttcataatttcgatcaaacagtctcatgagtgtttatatcaataagtttagtcga |
103 |
Q |
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| T |
7928323 |
atgtcgaagtaagttgaaaacagcttatgaaaatgtcaaactattttcataatttcgatcaaacagtctcatgagtgtttatgtcaataagtttagtcga |
7928224 |
T |
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| Q |
104 |
tccgaaacagtccctaagatggtaaatgaagaatatcactaaccggctagaactatctatcatgcaatgcatgtgcatgatattaaactgtcatcaaggt |
203 |
Q |
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| T |
7928223 |
tccgaaacagtccctaagatggtaaatgaagaatatcactaaccggttagaactgtctatcatgcaatgcatgtgcgtgatattaaactgtcatcaaggt |
7928124 |
T |
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| Q |
204 |
gatagacatagtaaaaatggttttgctcaaagtcaagagactctaatgtgatctaatggcaacatgtgaagcaagataaccatttgttctgagaagcatt |
303 |
Q |
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| T |
7928123 |
gacagacatagtaaaaatggttttgttcaaagtcaagaggctctaatgtgttctaatggcaacatgtgaagcaagataaccatttgttctgagaagcatt |
7928024 |
T |
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| Q |
304 |
tggggttgatttagggttttgagctgcagctggtgttcctttaacattctgttgcactggctgcttcacttgatttctcacgtcttcctttcgtttcgct |
403 |
Q |
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| T |
7928023 |
tggggttgatttagggttttgagctgcagctggtgttcctttaacattctgttgcactggctgcttcacttgatttctcacgtcttcgtttcgtttcgct |
7927924 |
T |
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| Q |
404 |
gaaggtgttttgtctccatctgtcattcttcacattac-nnnnnnnnnngtcaaaccactttctcaagaaacctagaatcaaataaagatcagcattcta |
502 |
Q |
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| T |
7927923 |
gaaggtgttttgtctccatctgtcattcttcacattacaaaaaaaaaaagtcaaaccactttctcaagaaacctagaatcaaataaagatcagcattcta |
7927824 |
T |
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| Q |
503 |
gtagtttagaaaaatgtcttcaattgtaatc |
533 |
Q |
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| T |
7927823 |
gtagtttagaaaaatgtcttcaattgtaatc |
7927793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 33192249 - 33192317
Alignment:
| Q |
18 |
tgaaaacagcttatgaaaatgtca--aactattttcataatttcgatcaaacagtctcatgagtgtttat |
85 |
Q |
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| T |
33192249 |
tgaaaacagcttatggatatgtcataaactgttttcataagttct-tcaaacagtctcatgagtgtttat |
33192317 |
T |
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