View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18924_low_5 (Length: 475)
Name: NF18924_low_5
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18924_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 5 - 442
Target Start/End: Complemental strand, 22047137 - 22046699
Alignment:
| Q |
5 |
gatttcaacttaagttttcattttcctctaatcactaaaggatggattgaattgagacaattatttgaaattaatggtaacaaacttcttttaatgacat |
104 |
Q |
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| T |
22047137 |
gatttcaacttaagttttcattttcctctaatcactaaaggatggactgaattgagacaattatttggaattaatggtaacaaacttcttttaatgacat |
22047038 |
T |
|
| Q |
105 |
accttggtgacaatcattttgcccttgatgtccagccagatgaattcagcccattgaagttaccatattatcatacatatcaa-atattggacttgaacc |
203 |
Q |
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| T |
22047037 |
accttggtgacaatcgttttggccttgatgtccagctagatgaattcagcccattgaagttaccatattatcatacatatcgatatattggacttgaact |
22046938 |
T |
|
| Q |
204 |
aaaaccttttgaagtgaaacttacaaagtattattctgagaagtatagattggttagttagtttttatatctcaaactggtaattttacattcacaattc |
303 |
Q |
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| T |
22046937 |
agaaccttttgaagtgaaacttacaaagtattatgctgagaagtataaattggttagttagtttttatatctcaaactggtaattttacattcacaattc |
22046838 |
T |
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| Q |
304 |
ttcattttatttttcgtttatgcttctatttgcagacattgaagaaggaatttgcaaactatattagaacttctaaatatgattctatggaaatgtatgg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
22046837 |
ttcattttatttttcgtttatgcttctatttgcagacattgaagaaggaatttgcaaactatattagaacttctaaatatgattatgtggaaatgtatgg |
22046738 |
T |
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| Q |
404 |
accagaaagcatggaagttgatgtcaagattcttaagag |
442 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
22046737 |
accagaaggcatggaagttgatgtcaagattcttaagag |
22046699 |
T |
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