View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18924_low_6 (Length: 431)
Name: NF18924_low_6
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18924_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 186 - 414
Target Start/End: Original strand, 20067867 - 20068089
Alignment:
| Q |
186 |
tcgatcaccctttctccactttcaatctcctctccaaaaccctatccactttcccgaatttccctcttccttataacccgaaagccgcaaatctcattga |
285 |
Q |
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| T |
20067867 |
tcgatcaccctttctccactttcaatctcctctccaaaaccctatccactttcccgaatttccctctaacttataacccgaaagccgcaaatctcattga |
20067966 |
T |
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| Q |
286 |
ttccctcactcagcttcttcatgattacccctgggaacctaattccgacgccgacaccgacaccgacaccacaactcctcttgtttctcctaatttaatt |
385 |
Q |
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| T |
20067967 |
ttccctcactcagcttcttcatgattacccctgggaacctaattccgacg------ccgacaccgacaccacaactcctcttgtttctcctaatttaatt |
20068060 |
T |
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| Q |
386 |
ctattgtttactccttttttcaattcatt |
414 |
Q |
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| T |
20068061 |
ctattgtttactccttttttcaattcatt |
20068089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 20067713 - 20067748
Alignment:
| Q |
32 |
tacatcaaaaacattctctccacctctaaaacccta |
67 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
20067713 |
tacatcaaaaacattctctccacctctaaaacccta |
20067748 |
T |
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