View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18924_low_7 (Length: 393)
Name: NF18924_low_7
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18924_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 101 - 378
Target Start/End: Original strand, 45105476 - 45105753
Alignment:
| Q |
101 |
tgttacaataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttcttttcttttgcgacgtactaattatcttaaagt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45105476 |
tgttacgataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttcttttcttttgcgacgtactaattatcttaaagt |
45105575 |
T |
|
| Q |
201 |
atcattaacatactgaattgattatgcataaatgaattaatagatggacaagacctctatacttggtgaagcaatcaattatgtgaaactacttcaagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45105576 |
atcattaacatactgaattgattatgcataaattaattaatagatggacaagacctctatacttggtgaagcaatcaattatgtgaaaatacttcaagaa |
45105675 |
T |
|
| Q |
301 |
cgtgtgaaggagttagaggagcagaacaagaggaacaaagaatcaccaataatccacaaaagtgatttgtgttcaaat |
378 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45105676 |
cgtgtgaaggagttagaggaacggaacaagaggaacaacgaatcaacaataatccacaaaagtgatttgtgttcaaat |
45105753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 45131869 - 45132024
Alignment:
| Q |
197 |
aagtatcattaacatactgaattgattatgcataaatgaattaatagatggacaagacctctatacttggtgaagcaatcaattatgtgaaactacttca |
296 |
Q |
| |
|
||||| |||||||||| ||||| |||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45131869 |
aagtagcattaacatattgaat-gattttgcataaattaattaatagatggacaagaactatatacttggtgaagcaatcagttatgtgaaactacttca |
45131967 |
T |
|
| Q |
297 |
agaacgtgtgaaggagttagaggagcagaacaagaggaacaaagaatcaccaataat |
353 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||| | |||||||||| ||||||| |
|
|
| T |
45131968 |
agaacgtgtgaaggagctagaggatcaaaacaagaatagcaaagaatcaacaataat |
45132024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University