View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18924_low_9 (Length: 370)

Name: NF18924_low_9
Description: NF18924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18924_low_9
NF18924_low_9
[»] chr1 (3 HSPs)
chr1 (16-110)||(46536916-46537010)
chr1 (175-256)||(46537075-46537156)
chr1 (314-354)||(46537214-46537254)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 46536916 - 46537010
Alignment:
Q  16 acacacagagcctatgacaaataattctgaagtttagtagggtccatgtccctaaacctttgggtccattttctcagatactcaaacaagatatc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46536916 acacacagagcctatgacaaataattctgaagtttagtagggtccatgtccctaaacctttgggtccattttctcagatactcaaacaagatatc 46537010  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 46537075 - 46537156
Alignment:
Q  175 actcacaatttcacaacacacaggaaaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatacca 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537075 actcacaatttcacaacacacaggaaaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatacca 46537156  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 46537214 - 46537254
Alignment:
Q  314 tattaacacacactaacgtgcgcattccacctcatcaatat 354  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46537214 tattaacacacactaacgtgcgcattccacctcatcaatat 46537254  T

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