View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18925_high_10 (Length: 244)
Name: NF18925_high_10
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18925_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34232129 - 34232354
Alignment:
| Q |
1 |
tctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttctatca |
100 |
Q |
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| T |
34232129 |
tctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgtcagttacaatttttctcatctaagggaattggatttgtcttctatca |
34232228 |
T |
|
| Q |
101 |
acttgacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataacaatcttaatggaagggtgccaaattggttgtt |
200 |
Q |
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| T |
34232229 |
acttgacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataacaatcttaatggaagggtgccaaattggttgtt |
34232328 |
T |
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| Q |
201 |
tgaaacagcagaatctttgaacctct |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
34232329 |
tgaaacagcagaatctttgaacctct |
34232354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 42129650 - 42129461
Alignment:
| Q |
5 |
tgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttctatcaactt |
104 |
Q |
| |
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|||| |||||||| |||| ||||||||| |||| |||||| ||||||| | ||||||||||||| ||||| |||||||||| ||||||||||| || |
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| T |
42129650 |
tgtcactttcacataatagccaattatcattaacatttgaacccaatgtcaattacaatttttcttatctatcaaaattggatttgtcttctatcaattt |
42129551 |
T |
|
| Q |
105 |
gacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataacaatcttaatggaagggtgccaaattggtt |
197 |
Q |
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| T |
42129550 |
gacagaatttccca---tatcagggaaagtcccattgttagattctcttgatttgtccaataacaaacttaatggaaaggtgccagattggtt |
42129461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 41712879 - 41713070
Alignment:
| Q |
5 |
tgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttctatcaactt |
104 |
Q |
| |
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|||||||||||| |||| ||||| ||||||| ||||||||||| ||| | ||||||||||||||| |||| |||||||||||||||||| | | || |
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| T |
41712879 |
tgtccctttcacttaataatcaattgtcactaaactttgaatccattgtcaattacaatttttctcaactaatagaattggatttatcttctttgagttt |
41712978 |
T |
|
| Q |
105 |
gacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataacaatcttaatggaagggtgccaaattggt |
196 |
Q |
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| T |
41712979 |
gactcgattttcaaaattatcaggaaaactttcaaatttgaaatattttgatctgtctaataacaaaattaatggaagagtgccaaattggt |
41713070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 34239885 - 34239975
Alignment:
| Q |
5 |
tgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttc |
95 |
Q |
| |
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| T |
34239885 |
tgtccctttcacataatagccaattatcactaaactttgaatacaatgttacttaccatttttctcaactaacaaaattggatttgtcttc |
34239975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 41571338 - 41571402
Alignment:
| Q |
5 |
tgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttct |
69 |
Q |
| |
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||||||||||||| |||| |||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
41571338 |
tgtccctttcacataatagtcaattatcaccgaactttgaatccaatgtcagttacaatttttct |
41571402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 34240023 - 34240097
Alignment:
| Q |
152 |
ttgatttgtccaataacaatcttaatggaagggtgccaaattggttgtttgaaacagcagaatctttgaacctct |
226 |
Q |
| |
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||||||||||||||||||| |||||||||| ||| | |||||||| |||||||| || |||||||||||||| |
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| T |
34240023 |
ttgatttgtccaataacaaacttaatggaacagtgtccaattggttacttgaaacatcaagatctttgaacctct |
34240097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 41571459 - 41571541
Alignment:
| Q |
123 |
atcagaaaaattcctaagtttggattattttgatttgtccaataacaatcttaatggaagggtgccaaattggttgtttgaaa |
205 |
Q |
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| T |
41571459 |
atcaggaaaattccctagtttgagatatcttgatttgtccaacaacaaactttatggaagagtgcccaattggttgcttgaaa |
41571541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 12249249 - 12249035
Alignment:
| Q |
5 |
tgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttctatcaactt |
104 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||| || || || | ||||| |||| |||| ||||| |||| || |
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| T |
12249249 |
tgtccctttcacataatagccaattatcactaacctttgaatccaatgtcagtttcatttactcccgactaagaatattgtattttccttctgtcaattt |
12249150 |
T |
|
| Q |
105 |
gacaaactttcccat-attatcagaaaaattcctaagtttggattattttgatttgtccaataacaatcttaatggaagggtgccaaattggttgtttga |
203 |
Q |
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|||| | ||||||| ||| |||||| ||| || |||| | |||||||||| ||||| || ||||||||||| ||||| ||||||||| |||| |
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| T |
12249149 |
gacagaatttcccaagattg-------aattcccaagattagattctcttgatttgtcaaataataaacttaatggaagcgtgcccaattggttgcttga |
12249057 |
T |
|
| Q |
204 |
aacagcagaatctttgaacctc |
225 |
Q |
| |
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|| | ||| ||||||||||||| |
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|
| T |
12249056 |
aatatcaggatctttgaacctc |
12249035 |
T |
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