View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18925_high_3 (Length: 385)
Name: NF18925_high_3
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18925_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 39727233 - 39726882
Alignment:
| Q |
15 |
tataaaaatgataccttaaacaatttttgtaggtcaacggttctttggtttagctcttttacatcacatagtcacgtatacacgtatcttagctctctgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39727233 |
tataaaaatgataccttaaacaatttttgtaggtcaacggttctttggtttagctcttttacatcacatattcacgtatacacgtatcttagctctctgt |
39727134 |
T |
|
| Q |
115 |
atatataaaccaagttcatagagtatttattgagtgtgcaattgtaatagtaacaatatataaactaagcaaacattaatcatggctgctccaccggtaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727133 |
atatataaaccaagttcatagagtatttattgagtgtgcaattgtaatagtaacaatatataaactaagcaaacattaatcatggctgctccaccggtaa |
39727034 |
T |
|
| Q |
215 |
acacattaccggtagcataccaagcatggacaagtctagcagtaccagactggttaaacaaaggagacaactcatggcaaatgatatcagctacccttgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727033 |
acacattaccggtagcataccaagcatggacaagtctagcagtaccagactggttaaacaaaggagacaactcatggcaaatgatatcagctacccttgt |
39726934 |
T |
|
| Q |
315 |
tggaattcaaagcatgccaggactagttatcctctatggcagcatagtgaaa |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726933 |
tggaattcaaagcatgccaggactagttatcctctatggcagcatagtgaaa |
39726882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 25671529 - 25671421
Alignment:
| Q |
258 |
accagactggttaaacaaaggagacaactcatggcaaatgatatcagctacccttgttggaattcaaagcatgccaggactagttatcctctatggcagc |
357 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| | |||| || || ||||| | |||||||||||||||||||| || ||||||| ||| |
|
|
| T |
25671529 |
accagaatggttaaacaaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagc |
25671430 |
T |
|
| Q |
358 |
atagtgaaa |
366 |
Q |
| |
|
||||||||| |
|
|
| T |
25671429 |
atagtgaaa |
25671421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 5625726 - 5625643
Alignment:
| Q |
269 |
taaacaaaggagacaactcatggcaaatgatatcagctacccttgttggaattcaaagcatgccaggactagttatcctctatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || | ||||| ||||| | |||||||||||||| || || || ||||||| |
|
|
| T |
5625726 |
taaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggtctacaaagcatgccaggtcttgtaattctctatg |
5625643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University