View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18925_high_5 (Length: 361)

Name: NF18925_high_5
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18925_high_5
NF18925_high_5
[»] chr3 (3 HSPs)
chr3 (1-342)||(47244717-47245058)
chr3 (1-168)||(47244544-47244711)
chr3 (199-246)||(1101923-1101970)
[»] chr7 (4 HSPs)
chr7 (130-195)||(13010148-13010213)
chr7 (133-195)||(34693167-34693229)
chr7 (199-239)||(14657006-14657046)
chr7 (199-254)||(1502256-1502312)
[»] chr5 (4 HSPs)
chr5 (130-195)||(20700282-20700347)
chr5 (133-195)||(14810411-14810473)
chr5 (130-195)||(18587742-18587807)
chr5 (199-238)||(17688130-17688169)
[»] chr1 (4 HSPs)
chr1 (130-195)||(3230682-3230747)
chr1 (130-196)||(18656998-18657064)
chr1 (199-246)||(15123110-15123157)
chr1 (199-246)||(15147298-15147345)
[»] chr4 (3 HSPs)
chr4 (130-195)||(29575399-29575464)
chr4 (206-246)||(55922859-55922899)
chr4 (199-246)||(30036718-30036766)
[»] chr2 (1 HSPs)
chr2 (199-246)||(24450640-24450687)
[»] chr8 (1 HSPs)
chr8 (202-246)||(27673299-27673343)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 47244717 - 47245058
Alignment:
Q  1 ttttgaataagttggatccccgacactcctcatgtcctacacaagacaagcaacgaaccactatttgagaatcaacataaacatctagtgccttatagct 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47244717 ttttgaataagttggatccccgacacttctcatgtcctacacaagacaggcaacgaaccactatttgagaatcaacataaacatctagtgacttatagct 47244816  T
Q  101 atgatctcatgctaaaaaagaatttttgaaagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagtaacaat 200  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  47244817 atgatctcgtgctaaaaaataatttttgaaagcaaacttaaggtgtttcattcataataatagtagcagtacaagaaagaattgcatcaaaagtaacaat 47244916  T
Q  201 atgaaaaaatcgatatgataaatttttcaaaactcatgagtattttaaaatataccactagaatggccaaattaacaaacagtatcgacaactttacatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  47244917 atgaaaaaatcgatatgataaatttttcaaaactcatgagtattttaaaaaataccactagaatggccaaattaacgaacaatgtcgacaactttacatt 47245016  T
Q  301 ataaaaccacgacagcttctaacaactaagtctttgctacat 342  Q
    |||||||||||||| ||||||| |||||||||  ||||||||    
T  47245017 ataaaaccacgacaacttctaataactaagtccctgctacat 47245058  T

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Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 47244544 - 47244711
Alignment:
Q  1 ttttgaataagttggatccccgacactcctcatgtcctacacaagacaagcaacgaaccactatttgagaatcaacataaacatctagtgccttatagct 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47244544 ttttgaataagttggatccccgacacttctcatgtcctacacaagacaggcaacgaaccactatttgagaatcaacataaacatctagtgccttatagct 47244643  T
Q  101 atgatctcatgctaaaaaagaatttttgaaagcaaacttaaggtgtttcattcataataatagtagca 168  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47244644 atgatctcgtgctaaaaaataatttttgaaagcaaacttaaggtgtttcattcataataatagtagca 47244711  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 1101923 - 1101970
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatgagtatttt 246  Q
    |||||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  1101923 atatgagaaaatcgatatgataaaattttgaaaactcatgactatttt 1101970  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 13010148 - 13010213
Alignment:
Q  130 aagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||    
T  13010148 aagcaaatttaaggtgtttcattcataataatagtagcaatacaaaaaggaattacatcaaaagta 13010213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 34693229 - 34693167
Alignment:
Q  133 caaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    |||| |||||||||||||||||||||||||||| |  ||||| || ||||||| |||||||||    
T  34693229 caaatttaaggtgtttcattcataataatagtaacgatacaaaaaggaattacatcaaaagta 34693167  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 14657006 - 14657046
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatga 239  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  14657006 atatgagaaaatcgatatgataaaattttcaaaactcatga 14657046  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 1502312 - 1502256
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatgagtatttt-aaaatata 254  Q
    ||||||||||||||||||||| || |||| ||||||||| | |||||| ||||||||    
T  1502312 atatgaaaaaatcgatatgattaaattttgaaaactcatcactattttcaaaatata 1502256  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 20700347 - 20700282
Alignment:
Q  130 aagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||    
T  20700347 aagcaaatttaaggtgtttcattcataataatagtagcaatacaaaaaggaattacatcaaaagta 20700282  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 14810473 - 14810411
Alignment:
Q  133 caaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  14810473 caaatttaaggtgtctcattcataataatagtagcaatacaaaaaagaattacatcaaaagta 14810411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 18587742 - 18587807
Alignment:
Q  130 aagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||| |  ||||||| |||||||||    
T  18587742 aagcaaatttaaggtgattcattcataataatagtagcaatacaaaagggaattacatcaaaagta 18587807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 17688169 - 17688130
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatg 238  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  17688169 atatgagaaaatcgatatgataaaattttcaaaactcatg 17688130  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 3230747 - 3230682
Alignment:
Q  130 aagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    ||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  3230747 aagcaaacttacgatgtttcattcataataatattagcaatacaagaaagaattacatcaaaagta 3230682  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 18656998 - 18657064
Alignment:
Q  130 aagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagtaa 196  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||| || ||||||| ||||||||||    
T  18656998 aagcaaatttaagatgtttcattcataataatagtagcaatacaaaaaggaattacatcaaaagtaa 18657064  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 15123157 - 15123110
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatgagtatttt 246  Q
    |||||||||||| ||||||||||||| || ||||||||||| ||||||    
T  15123157 atatgaaaaaatagatatgataaattattgaaaactcatgactatttt 15123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 15147345 - 15147298
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatgagtatttt 246  Q
    |||||||||||| ||||||||||||| || ||||||||||| ||||||    
T  15147345 atatgaaaaaatagatatgataaattattgaaaactcatgactatttt 15147298  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 29575399 - 29575464
Alignment:
Q  130 aagcaaacttaaggtgtttcattcataataatagtagcattacaagaaagaattacgtcaaaagta 195  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||  ||||||||    
T  29575399 aagcaaatttaaggtgtttcattcataataatagtagcaatacaaaaaggaattacaacaaaagta 29575464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 55922899 - 55922859
Alignment:
Q  206 aaaatcgatatgataaatttttcaaaactcatgagtatttt 246  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  55922899 aaaatcgatatgataaaattttcaaaactcatgagtttttt 55922859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 30036718 - 30036766
Alignment:
Q  199 atatgaaaaaatcgatatgat-aaatttttcaaaactcatgagtatttt 246  Q
    ||||||||||||||||||||| |||||||  ||||||||||| ||||||    
T  30036718 atatgaaaaaatcgatatgataaaattttgaaaaactcatgactatttt 30036766  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 24450687 - 24450640
Alignment:
Q  199 atatgaaaaaatcgatatgataaatttttcaaaactcatgagtatttt 246  Q
    |||||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  24450687 atatgagaaaatcgatatgataaaattttgaaaactcatgactatttt 24450640  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 27673343 - 27673299
Alignment:
Q  202 tgaaaaaatcgatatgataaatttttcaaaactcatgagtatttt 246  Q
    ||||||| ||||||||||||| |||| ||||||||||| ||||||    
T  27673343 tgaaaaagtcgatatgataaaattttaaaaactcatgactatttt 27673299  T

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