View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18925_high_6 (Length: 359)
Name: NF18925_high_6
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18925_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 35445315 - 35444969
Alignment:
| Q |
1 |
aagatagagagatgtatgtattttcacatatataatacctcttcttcaagtgttgactttgccaaaatatctttgaatctttggtgaaaaaattgattaa |
100 |
Q |
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| T |
35445315 |
aagatagagagatgtgtgtattttcacatatataatacctcttcttcaagtgttgactttgccaaaatatctttgaatctttggagaaaaaattgattaa |
35445216 |
T |
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| Q |
101 |
ccttagcagcttcattgttaccaatgcttttaagtgaacgaaatagtttaagatctatttcagtttcaccaaaagttgttttggaataccaatcattgaa |
200 |
Q |
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| T |
35445215 |
ccttagcagcttcattgttaccaatgcttttaagtgaacgaaatagtttaagatctatttcagtttcaccaaaagttgttttggaataccaatcattgaa |
35445116 |
T |
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| Q |
201 |
aacacctgatgctggaaagctgatgataacttctggaggattgcttttgttgttcttttctataaggtagagtttctctggtgtcttgtgagccttcaag |
300 |
Q |
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| T |
35445115 |
aacacctgatgctggaaagctgatgataacttctggaggattgcttttgttgttcttttctataaggtagagtttctctggtgtcttgtgagccttcaag |
35445016 |
T |
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| Q |
301 |
gacgcagcaaatgacttatcaattctctctgcactcaattctttgat |
347 |
Q |
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| T |
35445015 |
gacgcagcaaatgacttatcaattctctctgcactcaattctttgat |
35444969 |
T |
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