View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18925_low_10 (Length: 279)
Name: NF18925_low_10
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18925_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 20490294 - 20490040
Alignment:
| Q |
15 |
agcaatttcattgatgcacttcctgtggtaagttattttgattaaaaattttannnnnnnnataagatttgttatattaggttgtgaaattaattgatgg |
114 |
Q |
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| T |
20490294 |
agcaatttcattgatgcacttcctgtggtaagttattttgattaaaattttaattttttttataagatttgttatattgggttgtgaaattaattgatgg |
20490195 |
T |
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| Q |
115 |
gtatgtgttattttgattaaagtttgaacttttaagtgatttgttatgttgggttgaataattgattgatgggtatgtgtgattgaaaatttgannnnnn |
214 |
Q |
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| T |
20490194 |
gtatgtgttattttgattaaagtttgaatttttaagtgatttgttatgttgggttgaataattgattgatgggtatgtgtgattgaaaatttgatttttt |
20490095 |
T |
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| Q |
215 |
nnnnnnnnnnnnnnaggtgaagtattgttctgaaaccaataagaggttgattcat |
269 |
Q |
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| T |
20490094 |
tgatgtgtttttttaggtgaagtattgttctgaaaccaataagaggttgattcat |
20490040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 50228981 - 50228936
Alignment:
| Q |
121 |
gttattttgattaaagtttgaacttttaagtgatttgttatgttgg |
166 |
Q |
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| T |
50228981 |
gttattttgattaaagtttgaatatttatgtgatttgttatattgg |
50228936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 50229003 - 50228967
Alignment:
| Q |
24 |
attgatgcacttcctgtggtaagttattttgattaaa |
60 |
Q |
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| T |
50229003 |
attgatgtacttcctttggtaagttattttgattaaa |
50228967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 18448399 - 18448354
Alignment:
| Q |
15 |
agcaatttcattgatgcacttcctgtggtaagttattttgattaaa |
60 |
Q |
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| T |
18448399 |
agcaatttcattgatgcacttcctgtagtaagttatttcgattaaa |
18448354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 36406190 - 36406148
Alignment:
| Q |
18 |
aatttcattgatgcacttcctgtggtaagttattttgattaaa |
60 |
Q |
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| T |
36406190 |
aatttcattgatgcacttcctgtagtaagttatttcgattaaa |
36406148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 55351429 - 55351466
Alignment:
| Q |
15 |
agcaatttcattgatgcacttcctgtggtaagttattt |
52 |
Q |
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| T |
55351429 |
agcaatttcattgatgcacttcctgtagtaagttattt |
55351466 |
T |
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