View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18925_low_2 (Length: 467)
Name: NF18925_low_2
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18925_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 29661273 - 29660838
Alignment:
| Q |
16 |
cagcattatttttgttgttgatacggttcagggttaattgttactaaatacaagttgtatatagtaaactctaaacttgaaatgatagaaagacgtacat |
115 |
Q |
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| T |
29661273 |
cagcattatttgtgttgttgatacggttcagggttaattgttactaaatacaagttgtatatagcaaactctaaacttgaaatgatagaaagacgtagat |
29661174 |
T |
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| Q |
116 |
agttagtttactgatcgatttagttagcctgacagtgtagagtagtggaagcagacatgaattggctaagaaattgaactacaaaacatataacatgaaa |
215 |
Q |
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| T |
29661173 |
agttagtttactgatcgatttagttagcctgacagtgtagagtagtggaagcagacatgaattggctaagaaattgaactacaaaacatataacatgaaa |
29661074 |
T |
|
| Q |
216 |
agttttggtaagatatagtaatctgcacacaagtcttctatatgctgatggattgtaataaggaggcaaagatgcatcaagcttggtgagaggagtaaga |
315 |
Q |
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| T |
29661073 |
agttttggtaagatatagtaatctgcacacaagtcttctatatgctgatggattgtaataaggaggcaaagatgcatcaagcttggtgagaggagtaaga |
29660974 |
T |
|
| Q |
316 |
cagggcttgactgcaatcaaacctttgtcagagagaatatcaagggcatattttctctgattggggtgaatactttaatggaacgatccacgtccattct |
415 |
Q |
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| T |
29660973 |
cagggcttggctgcaatcaaacctttgtcagagagaatatcaagggcatattctctctgattggggtgaatactttaatggaacgatccacgtccaatct |
29660874 |
T |
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| Q |
416 |
aagtatgcattttagggagctgaaatccttaatttt |
451 |
Q |
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| T |
29660873 |
aagtatgcattttagggagctcaaatacttaatttt |
29660838 |
T |
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Back To:
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 31592775 - 31592822
Alignment:
| Q |
60 |
taaatacaagttgtatatagtaaactctaaacttgaaatgatagaaag |
107 |
Q |
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| T |
31592775 |
taaatacaagttgtatattgtaagccctaaacttgaaataatagaaag |
31592822 |
T |
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