View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18925_low_3 (Length: 399)

Name: NF18925_low_3
Description: NF18925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18925_low_3
NF18925_low_3
[»] chr6 (4 HSPs)
chr6 (4-382)||(11407826-11408204)
chr6 (130-192)||(19788107-19788169)
chr6 (144-189)||(5325828-5325873)
chr6 (149-189)||(30692993-30693033)
[»] chr8 (5 HSPs)
chr8 (145-193)||(34756002-34756050)
chr8 (145-189)||(40444142-40444186)
chr8 (147-189)||(21649592-21649634)
chr8 (149-190)||(31761895-31761936)
chr8 (157-189)||(4670139-4670171)
[»] chr7 (2 HSPs)
chr7 (135-190)||(17036754-17036808)
chr7 (130-189)||(14573909-14573968)
[»] chr5 (2 HSPs)
chr5 (147-190)||(142610-142653)
chr5 (147-189)||(18058318-18058360)
[»] chr1 (2 HSPs)
chr1 (151-190)||(34041254-34041293)
chr1 (147-180)||(22522502-22522535)
[»] chr3 (2 HSPs)
chr3 (147-189)||(1318818-1318860)
chr3 (147-191)||(26149133-26149177)
[»] chr4 (1 HSPs)
chr4 (135-190)||(2750634-2750689)
[»] scaffold0003 (1 HSPs)
scaffold0003 (135-189)||(109825-109879)
[»] chr2 (1 HSPs)
chr2 (148-189)||(19178534-19178575)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 382
Target Start/End: Original strand, 11407826 - 11408204
Alignment:
Q  4 atgtcgaagaatatcgatatgtattacattcctgctccagtacagttacattgaccttaatatcaacatcatgatatagatacatttaaatatttaacaa 103  Q
    ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11407826 atgtccaaaaatagcgatatgtattacattcctgctccagtacagttacattgaccttaatatcaacatcatgatatagatacatttaaacatttaacaa 11407925  T
Q  104 cataaattattagttgtaagctacatactgtcaaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttatcaatcacaaca 203  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11407926 cataaattattagttgtaaacttcatactgtcaaattcaacgtcgaccaaccagtacccgtgcggatgcacgtgtatgttactagttatcaatcacaaca 11408025  T
Q  204 caacccacaacacctgtaacaagcttgaaccctttcctatatatcccactcaatttccgtgttgctatatatataattcttcttctttcaaatcacattc 303  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11408026 caacccacaacacctgtaacaaacttgaaccctttcctttatatctcgctcaatttccgtgttgctatatatataattcttcttctttcaaatcacattc 11408125  T
Q  304 ccattgaatacttcattcttcaattcttgctcctcataactgattcacttctttctccctcactacccctcacaacaat 382  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11408126 ccattgaattcttcattcttcaattcttgctcctcataactgattcacttctttctccctcactatccctcacaacaat 11408204  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 19788107 - 19788169
Alignment:
Q  130 actgtcaaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttat 192  Q
    ||||||||| ||  || |||||||| |||||||||||||||||||||||||||||||||||||    
T  19788107 actgtcaaaatcgtccacgaccaacgagtacccgtgcggatgcacgggtatgttactagttat 19788169  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 5325828 - 5325873
Alignment:
Q  144 cctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  5325828 cctcgactaaccagtacccgtgcggatgcacgggtatgttactagt 5325873  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 30693033 - 30692993
Alignment:
Q  149 accaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  30693033 accaaccagtacccgtgcatatgcacgggtatgttactagt 30692993  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 34756002 - 34756050
Alignment:
Q  145 ctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttatc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756002 ctcgaccaaccagtacccgtgcggatgcacgggtatgttactagttatc 34756050  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 40444142 - 40444186
Alignment:
Q  145 ctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  40444142 ctcgaccaaccagtacctgtgcggatgcacgggtatgttactagt 40444186  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 21649634 - 21649592
Alignment:
Q  147 cgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21649634 cgaccaacgagtacccgtgcggatgcacgggtatgttactagt 21649592  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 31761936 - 31761895
Alignment:
Q  149 accaaccagtacccgtgcggatgcacgggtatgttactagtt 190  Q
    |||||||||||||| |||||| ||||| ||||||||||||||    
T  31761936 accaaccagtacccatgcggacgcacgagtatgttactagtt 31761895  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 4670139 - 4670171
Alignment:
Q  157 gtacccgtgcggatgcacgggtatgttactagt 189  Q
    |||||||||||||||||||||||| ||||||||    
T  4670139 gtacccgtgcggatgcacgggtatcttactagt 4670171  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 17036754 - 17036808
Alignment:
Q  135 caaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagtt 190  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  17036754 caaattcaccctcgaccaaccagtacccgtgcggatgcac-ggtatgttactagtt 17036808  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 14573909 - 14573968
Alignment:
Q  130 actgtcaaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    ||||||||| ||  || |||||||| ||||||||||||||||||||||||||||| ||||    
T  14573909 actgtcaaaatcgtccacgaccaacgagtacccgtgcggatgcacgggtatgttattagt 14573968  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 142653 - 142610
Alignment:
Q  147 cgaccaaccagtacccgtgcggatgcacgggtatgttactagtt 190  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  142653 cgaccaaccagtacccgtgcggatgcacgggtattttactagtt 142610  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 18058360 - 18058318
Alignment:
Q  147 cgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  18058360 cgaccaaccagtacccgtgcggatgcacgggtattttactagt 18058318  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 34041293 - 34041254
Alignment:
Q  151 caaccagtacccgtgcggatgcacgggtatgttactagtt 190  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34041293 caaccagtacccgtgcggatgcacgggtatgttactagtt 34041254  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 22522502 - 22522535
Alignment:
Q  147 cgaccaaccagtacccgtgcggatgcacgggtat 180  Q
    ||||||||||||||||||||| ||||||||||||    
T  22522502 cgaccaaccagtacccgtgcgaatgcacgggtat 22522535  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 1318818 - 1318860
Alignment:
Q  147 cgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  1318818 cgaccaaccaatacccgtgcggatgcacgggtatgttactagt 1318860  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 26149133 - 26149177
Alignment:
Q  147 cgaccaaccagtacccgtgcggatgcacgggtatgttactagtta 191  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  26149133 cgaccaaccataacccgtgcggatgcacgggtatgttactagtta 26149177  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 2750689 - 2750634
Alignment:
Q  135 caaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagtt 190  Q
    ||||||||  |||||| |||||||||||||||||||||||| || ||||| |||||    
T  2750689 caaattcactctcgactaaccagtacccgtgcggatgcacgagtttgttattagtt 2750634  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 109879 - 109825
Alignment:
Q  135 caaattcaacctcgaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    |||||||| |||| ||| || ||||| ||||||||||||||||| ||||||||||    
T  109879 caaattcaccctcaaccgactagtactcgtgcggatgcacgggtctgttactagt 109825  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 19178575 - 19178534
Alignment:
Q  148 gaccaaccagtacccgtgcggatgcacgggtatgttactagt 189  Q
    ||||||| |||||||||||||||||| |||||| ||||||||    
T  19178575 gaccaactagtacccgtgcggatgcatgggtatcttactagt 19178534  T

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