View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_11 (Length: 545)
Name: NF18926_high_11
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Complemental strand, 34889971 - 34889444
Alignment:
| Q |
19 |
tcaacctcatttcttacactgacttagtgttggagtggtaacgttcctg---gcacccttctttccatcgtagaaatcgcaccatcgccgtgtcggagca |
115 |
Q |
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| T |
34889971 |
tcaacctcatttcctacactgacttagtgttggagtggtaacgttcctgcaggcacccttcgttccatcgtggagatcgcaccatcgccgtgtcggagca |
34889872 |
T |
|
| Q |
116 |
ccgcactgccaccgttgccatcatccgtcgttgtccgatatatcattttttacctcacatgcaaattctttcttacaaatgtttttaattgtaattgtaa |
215 |
Q |
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| T |
34889871 |
ccgcactaccaccgttgccatcatccgtctttacccgacatatcagtttttacctcacatgcaaattctttcttacaaatgtttttaattgtaattgtaa |
34889772 |
T |
|
| Q |
216 |
taataataatagcaacaatttattttggccaagtaaattcagaagacccccaacagatnnnnnnnnnnnnnnnn---gtagtcagtgatgtcgtatttaa |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34889771 |
tagtaataatagcaacaatttattttggccaagtaaattcagaagacccccaacagataaaaaaaaaaaaaaaaaaagtagtcagtgatgtcgtatttaa |
34889672 |
T |
|
| Q |
313 |
ccttggggtnnnnnnncaaaacaacaataattgaaggagcacaactagccagcaggtaagagttttggaattaatgttgttcagtacaaagtacatatgc |
412 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34889671 |
ccttggggtaaaaaaacaaaacaacaataattgaaggagcacaactagccagcaggtaagagttttggaattaatgttgttcagtacaaagtacatatgc |
34889572 |
T |
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| Q |
413 |
aagatcaccatgctatgatgaaaaaccacagggccttttatatgcaatccaatccttttgtacgacatatattatgcttgtttgttttgttgcatgcttt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34889571 |
aagatcaccatgctatgatgaaaaaccacagggccttttatatgcaatccaatccttttgtacgacatatattatgcttgtttgttttgttgcatgcttt |
34889472 |
T |
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| Q |
513 |
gaagtttgatgtttgtacctttgctact |
540 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
34889471 |
gaagtttgatgtttgtacctttgctact |
34889444 |
T |
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