View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_12 (Length: 534)
Name: NF18926_high_12
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 35684567 - 35685070
Alignment:
| Q |
17 |
gttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccattctttaatcagaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35684567 |
gttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaagtctactatgttccatggagaccattctttaatcagaaca |
35684666 |
T |
|
| Q |
117 |
catttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35684667 |
catttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgtgcatggacatcaaaccttttcaacactttg |
35684766 |
T |
|
| Q |
217 |
tcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684767 |
tcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaac |
35684866 |
T |
|
| Q |
317 |
aaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684867 |
aaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggaga |
35684966 |
T |
|
| Q |
417 |
aggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtagatccgaaattgttat |
516 |
Q |
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| T |
35684967 |
aggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtagatccgaaattgttat |
35685066 |
T |
|
| Q |
517 |
tgtt |
520 |
Q |
| |
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|||| |
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| T |
35685067 |
tgtt |
35685070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 40672575 - 40672148
Alignment:
| Q |
17 |
gttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccattctttaatcagaaca |
116 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||| ||||| ||||| |||||| | ||| | ||||||||||||||||||||||| ||| ||||| | |
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| T |
40672575 |
gttgcaactcatgcttatggaaatcgatctggggtcagatatatgactggtggtctgaaagtatactatgttccatggagaccatttgttatgcagaata |
40672476 |
T |
|
| Q |
117 |
catttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttg |
216 |
Q |
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| |||||||| | |||| | | |||||||||||||| ||||| | ||||||||||||||| || | ||||||||| ||| ||||||| ||| |||| |
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| T |
40672475 |
cgtttccaaccatctatgggttattaccaattataagaacgattcttattcgagaaagaattacagtggtgcatggacaccaagccttttcgacattttg |
40672376 |
T |
|
| Q |
217 |
tcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaac |
316 |
Q |
| |
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|||||| | || |||||||| |||| |||||||||||||||||||||||| |||||||| || | |||||| |||||||||||| || ||||||||| |
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| T |
40672375 |
tcatgaaactctcatgcatgcaagaaccatgggatacaaggttgtgtttacagatcattctctgtacggttttgctgatgctggaagcattcacatgaac |
40672276 |
T |
|
| Q |
317 |
aaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggaga |
416 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||| || |||||||||||||| ||||| ||||| ||||| || || |||| |||||| | || || | |
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| T |
40672275 |
aaggtgttgcagtttaccttggcagatgtgactcaagccatatgtgtttctcacacaagcaaggaaaacacagtgttacggtcaggtttgccaccagata |
40672176 |
T |
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| Q |
417 |
aggtttttgtaatacctaatgctgttga |
444 |
Q |
| |
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| |||||||||||||||||||| ||||| |
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| T |
40672175 |
aagtttttgtaatacctaatgccgttga |
40672148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 20685401 - 20685601
Alignment:
| Q |
17 |
gttgtaactcatgcttatggaaaacgctctggggttagatacatgacaggtggtttaaaaatctactatgttccatggagaccattctttaatcagaaca |
116 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||||| | |||||| ||| | ||| |||||||| ||||||||||||||||| ||| | |
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| T |
20685401 |
gttgtaacccatgcttatggaaaatgctctggggttagacacatgacggatggtttgaaagtgtaccatgttccacggagaccattctttaatatgaata |
20685500 |
T |
|
| Q |
117 |
catttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttg |
216 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20685501 |
catttccaactttatatggaacactcccaattataagaactattttcactcgagaaagaattaccgttgtgcatggacatcaaaccttttcaacactttg |
20685600 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
20685601 |
t |
20685601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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